Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01169 ATGAAACATTGCCGACATTGGGTTCTTGAGCTTTTGCTTAGTTCCTTCATGGGTACAGCTTCAACTGGGTACCCATTTGGAATCGCTGTCCATTCACATGGAAACTCGGCAGTCTCACCTCATAAATTGGAATTCTCGCGCTCTAATTTCCCTTTCCCCGCTGAATTTTCAAGAATCAATCCGCACTCCGGCTCTGTTTTCCATATTTCTTCCAAGGTATTGAAACATTTTAGCTCTTTTCTTTGTTATGAAATTTGTGCTCAATCGTTTGATTTCTTTGCGTATGAAGTGATCATCATTCATTTTCAGCGCTGGGATGAGTTCCCTATGGTTTCACTGCGTAAGCGATCATCAGTTTGTAAGATCCATAGTTTGCCTGACATTGATAATATCTTCTGGGATAAAGTTCCAACGCCCATACTTGATGTGATTGAAAATCCTATCCATTTGAAGAATTTGTCTCTTAAGGAACTGAAACAATTAGCTGAGGAAATTCGTTCGGAGTTGTCTTCCTTTCTTCCAAACGTACCAAAATCTTATAAGGCCAGTTTGGCAGTTGTGGAGCTGACTGTTGCCTTGCATCATGTTTTTCATGCTCCAGTGGACAAGATACTTTGGGATGCAGGAGAAGAGACCTATGCACACAAGATTCTTACCGGAAGACGCCCTCTCATGAGTACATTGCATAAAAAGAATGGTCTTTCTGGGTCCACATCTCGGTTAGAAAGTGAATTTGATCCATTTGGTGCTGCACATGGCTGCAATAGCATGGCAGTAGCAAGGGATATAAAAGGTAAACGTGAAAGAATAGTTACGATAATTAACAATGGGTCAACTATGGCGGGGCAAATATATGAAGCAATGAGTAATGTGGGATATTTGGACTCAAATATGATAGTGATCTTAAATGACAGTCGGCATTCTTTACACCCAAAACTTGATGAGGGCTCTAAGACATCTGTCAGTGCCTTGTCTAGCACCCTCAGCAGGCTCCAGTCCAGCAAATCCTTTCGAAAGTTTCGTGAAGCAGCTAAGGGTGTAACTAAAAGAATTGGTAAGGGAATGCATGAATTGGCTGCCAAGGTTGATCAATATGCTCGCGGCATGATGGGTCCCCCGGGATCAACCCTTTTTGAAGAGCTTGGACTCTATTATATAGGCCCTGTTGATGGCCACAATATGGAGGACCTCATTTGTGTTTTACAAGAAGTTGCATCACTTGATTCGATGGGTCCAGTATTGGTACATGTCATAACTGAAGAAAACTATGCAGTAGAAGGTTATCAGAGGGGTGCAGGCAGGCAACTGGATGGTTTATATAACATAGATTCATTGCTGTACGGAATTGATTCTCGAACATATAGTGATTGCTTTGTGGAGGCATTAATAGTGGAGGCGGAGAAGGACAAAAACATTGTGACAGTGCATGCTGGGATGCAGATGGAGCCATCAATTCAACTGTTTCGGGAAAGATTTCCTGATAAGTTCTTTGATGTGGGTATGGCTGAGCAACACGCAGTTACATTCGCTGCTGGTTTGTCATGTGGTGGATTGAAACCATTTTGTGTAATTCCTTCCACTTTCTTACAAAGGGCATACGATCAGGTCTCTCTCTCTCTCTCACTTTCTTCCTGCTTGCAACTCGCAAGCTTCTCCACGCAATTAAATATGCACTTACCACTTCGAGTGGTACATGATGTCGATCAGCAGAGAATTCCAGTACGTTTTGTAATTACCAGTGCTGGATTGGTAGGATCTGATGGTCCTATGCAATGTGGTGCATTTGATATAACATATATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGAATGAGCTAGTGCACATGGTGGCCACGGCAGCGTGCATCGATGATCAACCAGTATGCTTTCGATATCCAAGAGGCTCCATTGTCACCACTAACAACCTTGCCCTTGAAGGGGTTCCGATTGAAATTGGAAAAGGGAGGGTTCTTGCTGAGGGTAAGGATGTTGCTTTGCTTGGGTATGGGGCAATGGTTCAAAATTGCCTTAATGCTCGGGCTCTTCTCTCGAAGTTCGGTGTTGAGGTCACAGTTGCTGATGCAAGGTTCTGCAAGCCACTCGACATAGCACTTCTCCGACAACTTTGTGATAACCATGCATTTCTAATCACAGTTGAGGAAGGTTCAATCGGAGGCTTTGGATCTCATGTTGCACAATTCATCGCCCTTGATGGACGGCTGGATGGAAGAGTCAAGTGGCGACCTATAGTTCTACCAGATAATTACATAGAACAGGCATCACCACAAGAACAGCTCTCCCTCACCGGTCTGACTGGAAATCACATTGCTGCAACAGCATTAAGCCTGCTCGGCCGCCCCCGTGAAGCATTACTCATGATGTGTTAG 2400 43.83 MKHCRHWVLELLLSSFMGTASTGYPFGIAVHSHGNSAVSPHKLEFSRSNFPFPAEFSRINPHSGSVFHISSKVLKHFSSFLCYEICAQSFDFFAYEVIIIHFQRWDEFPMVSLRKRSSVCKIHSLPDIDNIFWDKVPTPILDVIENPIHLKNLSLKELKQLAEEIRSELSSFLPNVPKSYKASLAVVELTVALHHVFHAPVDKILWDAGEETYAHKILTGRRPLMSTLHKKNGLSGSTSRLESEFDPFGAAHGCNSMAVARDIKGKRERIVTIINNGSTMAGQIYEAMSNVGYLDSNMIVILNDSRHSLHPKLDEGSKTSVSALSSTLSRLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDQYARGMMGPPGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGPVLVHVITEENYAVEGYQRGAGRQLDGLYNIDSLLYGIDSRTYSDCFVEALIVEAEKDKNIVTVHAGMQMEPSIQLFRERFPDKFFDVGMAEQHAVTFAAGLSCGGLKPFCVIPSTFLQRAYDQVSLSLSLSSCLQLASFSTQLNMHLPLRVVHDVDQQRIPVRFVITSAGLVGSDGPMQCGAFDITYMSCLPNMIVMAPSDENELVHMVATAACIDDQPVCFRYPRGSIVTTNNLALEGVPIEIGKGRVLAEGKDVALLGYGAMVQNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSIGGFGSHVAQFIALDGRLDGRVKWRPIVLPDNYIEQASPQEQLSLTGLTGNHIAATALSLLGRPREALLMMC 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20310813 20315862 + Lsi08G011690.1 Lsi08g01169 669095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01169 799 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 562 799 IPR005477 GO:0008661|GO:0016114
Lsi08g01169 799 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 111 536 IPR005477 GO:0008661|GO:0016114
Lsi08g01169 799 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 141 419 IPR005477 GO:0008661|GO:0016114
Lsi08g01169 799 Pfam Transketolase, C-terminal domain 657 780 IPR033248 -
Lsi08g01169 799 SUPERFAMILY TK C-terminal domain-like 652 788 IPR009014 GO:0003824
Lsi08g01169 799 SMART Transket_pyr_3 452 644 IPR005475 -
Lsi08g01169 799 Gene3D - 133 426 - -
Lsi08g01169 799 Gene3D - 657 788 IPR009014 GO:0003824
Lsi08g01169 799 Gene3D - 452 652 - -
Lsi08g01169 799 CDD TPP_DXS 182 420 IPR005477 GO:0008661|GO:0016114
Lsi08g01169 799 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 562 799 - -
Lsi08g01169 799 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 111 536 - -
Lsi08g01169 799 Pfam Transketolase, pyrimidine binding domain 453 561 IPR005475 -
Lsi08g01169 799 Pfam Transketolase, pyrimidine binding domain 562 640 IPR005475 -
Lsi08g01169 799 CDD TPP_PYR_DXS_TK_like 458 638 - -
Lsi08g01169 799 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 452 667 IPR029061 -
Lsi08g01169 799 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 138 513 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01169 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101220427 1300.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01169 Lsi-Chr8:20310813 Lsi09g01384 Lsi-Chr9:21869561 1.49E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g434 . . . . . . . . . Cmo12g00271 . . . Car12g00300 Sed03g1587 Cpe07g00279 . Bhi04g01008 Tan02g2694 Cmetu03g0115 . Hepe10g0276 . Lcy13g1755 . . . . . . . Cone4ag1813 Cone7ag1723 . . . . . Cme03g01650 Blo17g00027 . . Bda13g01272 Bpe14g00571 . . Bma02g00033 . . . . Cma12g00319 . . . . . . . . . . . Cla08g01305 Cam08g1766 Cec08g1347 Cco08g1468 Clacu08g1462 . Cre08g1249 Lsi08g01169 . Chy03g01151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010569 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01169 Lsi_Chr08 FPKM 10.134744 9.161668 12.621189 13.702972 6.815115 6.833491 7.103132 14.452764 14.817765 15.700593