Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01170 ATGAGCAATATTATAGTCCCTCTGCCTTCCAACCTTCTCCCAGATGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTGACGGCGGCGACACTGGTCGGATTACAGAGCGTCCCGGGTCTAATAATCCTGTACGGCGGAGCGGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTTGGGTGGGGGTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGATCAGGAGTTTCTGCTAGAGCAAGCTTTTGGTGGGAAGTTTCCATCGGCTACAATGGTGTTTTTTCAATTTGTATTTGCAGCGATTACTTTGGTTTTGATTGCTGGGGCTTTGCTTGGGCGTATGAATTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCTTATACTTTTGTGGCGTTTAGTATTTGGAGTCCTAATGGATTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCCTCTGGTGTCGCTGGCTTCACCGCTGCTTACTGGGTTGGGCCACGGCTTTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTGATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGATGCCTCACTGGCGGTTCTGAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTGGTTTGCATCACTCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCGATTATAATGGGAGTGCTGTCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTCCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGTGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATCGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTTGGCGTTCAACTCCTCGGAATCGTCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAGTACATCGTCCCGCTCCGAATGTCCGAGGAGGACATGGCTATAGGCGACGAGGCTGCCCACGGCGAAGAGGCCTACGCCATTTGGGGCCAAGGCGAGAAGATGGATTCTTCTAAGTATGATATTGAAGTCCCGGTTGCAACTAAACATAGGCATACAGGCCAGGTTGAAATGGCCTAA 1428 51.4 MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLEQAFGGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIVFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEVPVATKHRHTGQVEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20318908 20322284 + Lsi08G011700.1 Lsi08g01170 669096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01170 475 PANTHER AMMONIUM TRANSPORTER 6 474 - -
Lsi08g01170 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi08g01170 475 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Lsi08g01170 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi08g01170 475 TIGRFAM amt: ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi08g01170 475 PANTHER AMMONIUM TRANSPORTER MEP2 6 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi08g01170 475 SUPERFAMILY Ammonium transporter 21 424 - -
Lsi08g01170 475 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005887
Lsi08g01170 475 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005887
Lsi08g01170 475 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00559 Lsi-Chr1:4484792 Lsi08g01170 Lsi-Chr8:20318908 0 dispersed
Lsi03g02239 Lsi-Chr3:33399862 Lsi08g01170 Lsi-Chr8:20318908 0 dispersed
Lsi08g01170 Lsi-Chr8:20318908 Lsi11g00907 Lsi-Chr11:12336294 8.62E-21 dispersed
Lsi08g01170 Lsi-Chr8:20318908 Lsi09g01170 Lsi-Chr9:18944306 1.27E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01170 K03320 - csv:101210590 898.271