Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01171 ATGGGGGCGCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCAGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCAGGCGTCAGGATTTTAGCTCCCACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTCGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCGAGCCCGGCCGGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATTCTTCTTGCAATCTTTAATGCTTGCGCTGTCATCACCAAATTTACAAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCACTAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGACCTATTGGAGTACCAATTTGAATGGTTGTATGCAAATGGGTTGCTTGCAGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAACAGCAGACATGCAAGATCATGGAAATATGGAACTGGCTGGTTTCGGAGTTTCATTGCAGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGCGAAGTTCCAGATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTGATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCACAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTCGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTCCTAAAGAGCTAGAAACCTTGACAAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGACGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGCATTAATATTTGCTATCCCTATAATGAGAATGATACCCACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGAAATCAATTCTGGGAAAGGATGTTGTTGCTCTTCATTACACCCAGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTTCAGTTTGCATATTTCTTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCATGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCTGGACATCGCGCCATGAATCTCACAGCACCGGAAAAGGAGCCACCTGATTCAATTGCTGAAGAAAGTAACGAAGAATACTATGATGCCGAGATACTAGATGAGATGACAACTCATAGAGGAGAATTAAAGCTTAGAACTGTAAGTTTCAACGAAGAAAGATTCTTTCAGGTTGGAAACAAATGTCGACGCCTCCAACTAACTTTACCACTTGTTACATCCTTTGGCTTAGCTTTTAACTCATTATTTTCCAACATTTGA 2043 43.47 MGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSRARPELGGDLFLAWAGWVCIWTGFFLILLAIFNACAVITKFTRVAGELFGMLIAVLFFQEALKGLISEFQIPKSEKPDLLEYQFEWLYANGLLAVIFSMGLLFTALNSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAALIFAIPIMRMIPTSVLWGYFAYMAIDSLPGNQFWERMLLLFITPSRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGIMFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAMNLTAPEKEPPDSIAEESNEEYYDAEILDEMTTHRGELKLRTVSFNEERFFQVGNKCRRLQLTLPLVTSFGLAFNSLFSNI 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20326857 20332546 + Lsi08G011710.1 Lsi08g01171 669097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01171 680 PANTHER BORON TRANSPORTER 6-RELATED 3 654 - -
Lsi08g01171 680 PANTHER ANION EXCHANGE PROTEIN 3 654 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lsi08g01171 680 Gene3D Helical hairpin bin 15 57 - -
Lsi08g01171 680 Pfam HCO3- transporter family 445 535 IPR011531 GO:0006820|GO:0016021
Lsi08g01171 680 Pfam HCO3- transporter family 196 371 IPR011531 GO:0006820|GO:0016021
Lsi08g01171 680 Pfam HCO3- transporter family 4 177 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01171 Lsi-Chr8:20326857 Lsi09g00535 Lsi-Chr9:5590499 5.58E-77 dispersed
Lsi02g00374 Lsi-Chr2:3242172 Lsi08g01171 Lsi-Chr8:20326857 0 transposed
Lsi03g01144 Lsi-Chr3:21678123 Lsi08g01171 Lsi-Chr8:20326857 0 transposed
Lsi07g00483 Lsi-Chr7:5076049 Lsi08g01171 Lsi-Chr8:20326857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01171 K24194 - csv:101220188 1241.48