Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01174 ATGGCGCTGCCAAATCAGGCCACCGTAGATTACCCTAGCTTCAAGCTTGTAATAGTCGGAGATGGTGGAACAGGGAAGACAACCTTTGTTAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACCGACAATTGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAAATAAGGTTCTACTGTTGGGATACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATTTTTCATGTGGCTTGTTCACTGTTCCTGCTTCCATTGGAGTTACTATTCACGGGCAATGTGCCATTATCATGTTTGATGTCACTGCTCGTTTAACATACAAAAATGTCCCAACATGGCATCGTGATCTCTGCAGGGTTTGTGAGAACATACCCATCGTATTGTGTGGAAACAAGGTCGATGTGAAAAACAGACAGGTTAAAGCAAAGCAGGTGACCTTCCACAGGAAGAAAAATCTGCAGTATTACGAAATATCTGCAAAGAGTAATTACAACTTTGAGAAGCCCTTCTTGTACCTTGCCAGAAAGCTTGCTGGGAATCCAGAGCTCCACTTCGTCGAATCACCTGCCCTGGCTCCTCCTGAAGTCCAAATTGACTTGGCCGCACAAGCACAGCATGAAGCAGAGTTGGCGCAAGCTGCTGCACAACCTCTTCCTGATGAAGATGACGATGCATTTGAGTAA 711 44.73 MALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYFSCGLFTVPASIGVTIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNPELHFVESPALAPPEVQIDLAAQAQHEAELAQAAAQPLPDEDDDAFE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20359042 20362553 + Lsi08G011740.1 Lsi08g01174 669100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01174 236 SMART ran_sub_2 19 235 - -
Lsi08g01174 236 CDD Ran 14 194 - -
Lsi08g01174 236 PANTHER RAN GTPASE 1 236 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 Gene3D - 5 234 IPR027417 -
Lsi08g01174 236 SMART rab_sub_5 14 189 - -
Lsi08g01174 236 SMART rho_sub_3 16 190 IPR001806 GO:0003924|GO:0005525
Lsi08g01174 236 Pfam Ras family 15 186 IPR001806 GO:0003924|GO:0005525
Lsi08g01174 236 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 236 - -
Lsi08g01174 236 ProSiteProfiles small GTPase Rab1 family profile. 8 225 - -
Lsi08g01174 236 ProSiteProfiles small GTPase Ran family profile. 7 186 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 212 IPR027417 -
Lsi08g01174 236 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 145 163 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 183 205 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lsi08g01174 236 MobiDBLite consensus disorder prediction 217 236 - -
Lsi08g01174 236 SMART ras_sub_4 11 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01174 K07936 RAN; GTP-binding nuclear protein Ran - csv:101219711 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00936 Lsi-Chr6:19259913 Lsi08g01174 Lsi-Chr8:20359042 7.14E-150 dispersed
Lsi06g00937 Lsi-Chr6:19265582 Lsi08g01174 Lsi-Chr8:20359042 7.14E-150 dispersed
Lsi08g01174 Lsi-Chr8:20359042 Lsi10g00673 Lsi-Chr10:9351279 9.85E-25 dispersed
Lsi08g01174 Lsi-Chr8:20359042 Lsi03g02085 Lsi-Chr3:32145011 2.14E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01174 Lsi_Chr08 FPKM 0.236715 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0