Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01175 ATGGAGAAGGTTTTCCCGAAGCTGCAAGGCGAACCATGGAGAGTCCTCGAGTTCTACAGCGGCATTGGTGGCATGAGGTACTCGCTACTGAGTGCTGGCATCGATGCGAAAGTGGTACAAGCTTTTGATATTAACGACAAAGCAAACGATGTTTACCAGCACAATTTCGGTGATCGTCCATACCAGGGTAATATTGAAAGTCTGACTGCTGCTGATATCGACAGCTACCAAGCTCACGTTTGGCTTCTTTCACCTCCTTGCCAACCATATACTAGACAAGGTCTACAAAAGCAATCTGGTGATGCTCGGGCATTTTCATTCCTCAAAATTCTTGAGTTAATGCTACAAGCATCAAGGCCACCAGTAATGTTATTCATGGAAAATGTTGTTGGCTTTGAGGCTAAAAGGAAGCCTTTATCCTTTCAGAAACAATTGTATGATAATCAACTTCTTTGGTCCCCAAGCCCATTACTTGAGAATGATGCTGACTTAGAAATCATTGAAAGTCATGGATCACAAGCGACTTCTGATAAGTTGCTGCTTTCTTGTGAGCCAATATGTAGGTTTCTCGACAATTCCAACCATCAAAATGAGTTTAGTTTTTGTGATGACAGTAGTATTCACAGAGAGGTTGCACTGGAGAAAAACAAGGATGTGAATGAGCAAGACATTGATTCTATTAATCAGTATCTTGTCCCGTCCAGTTTGATAGACAGATGGGGAAGTGCTATGGATATCATATATCCTGATTCAAGGCGATGCTGCTGTTTCACAAAAAGCTACTACCGATATGTGAAGGGTACGGGCTCACTTTTGGCACCGTTTGAGGCTGAAAGGATGGGCAAGGCTCATTCTCTGAAAGAGCAGAAGCTCAGATATTTTACTCCTAGAGAGGTTGCTAACTTGCACTCCTTTCCGGAAGATTTTCAATTTCCACAGCATATCGGCCTTAGACAACGTTATGCATTACTGGGGAACAGTTTGAGCATTGCCGTTGTTGCTCCCTTGCTCAGATATCTCTTTGCTGAGCCATCATGA 1038 43.06 MEKVFPKLQGEPWRVLEFYSGIGGMRYSLLSAGIDAKVVQAFDINDKANDVYQHNFGDRPYQGNIESLTAADIDSYQAHVWLLSPPCQPYTRQGLQKQSGDARAFSFLKILELMLQASRPPVMLFMENVVGFEAKRKPLSFQKQLYDNQLLWSPSPLLENDADLEIIESHGSQATSDKLLLSCEPICRFLDNSNHQNEFSFCDDSSIHREVALEKNKDVNEQDIDSINQYLVPSSLIDRWGSAMDIIYPDSRRCCCFTKSYYRYVKGTGSLLAPFEAERMGKAHSLKEQKLRYFTPREVANLHSFPEDFQFPQHIGLRQRYALLGNSLSIAVVAPLLRYLFAEPS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20362599 20371354 - Lsi08G011750.1 Lsi08g01175 669101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01175 345 Pfam C-5 cytosine-specific DNA methylase 224 338 IPR001525 GO:0008168
Lsi08g01175 345 Pfam C-5 cytosine-specific DNA methylase 14 142 IPR001525 GO:0008168
Lsi08g01175 345 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 340 IPR029063 -
Lsi08g01175 345 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 13 345 IPR001525 GO:0008168
Lsi08g01175 345 Gene3D DNA Methylase, subunit A, domain 2 200 328 - -
Lsi08g01175 345 Gene3D Vaccinia Virus protein VP39 6 170 IPR029063 -
Lsi08g01175 345 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 134 343 - -
Lsi08g01175 345 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 11 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01175 K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204] - csv:101219472 617.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g443 Blo01g01376 . Bda01g00733 . . Bpe02g00573 . . Cmo05g00414 Cmo12g00274 . Cma05g00403 . Car12g00304 Sed03g1593 Cpe07g00283 . Bhi04g01000 Tan02g2700 Cmetu03g2157 . Hepe10g0271 . Lcy13g1761 . . . . . . . Cone4ag1807 Cone7ag1715 . . . . . Cme03g01643 . . . . . . . . . . . . . . Car05g00337 Cpe11g00343 . . . . . . . . Cla08g01311 Cam08g1771 Cec08g1352 Cco08g1473 Clacu08g1467 . Cre08g1254 Lsi08g01175 . Chy03g01145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008501 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01175 Lsi_Chr08 FPKM 4.986836 4.674875 5.917133 6.732431 5.371544 5.463738 5.635039 3.737244 3.654829 3.383652