Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01176 ATGACAAAGAAGAAGAACCCTTTGGTTTTTCTGGATGTCTCGATTGATGGAGACCCCAGGGAAAAAATGGTTTTTGAGCTGTTTTATGATGTTGCTCCAAAAACGGCCGAGAATTTTCGTGCACTGTGTACAGGAGAGAAAGGAATTGGCCCCAAAACTGGAAGACCACTACATTATAAGGGATCCTTTTTTCATCGGATTATTGGAGGTTCTATGGCACAGGCTGGAGATTTTGTCAAACGAGATGGTACTGTTGGAGAGAGCATATACGGTGGAAAGTTTCCAGATGAACTTCCTCGACTAAAACATGATGGACCTGGTCTTCTATCAATGGCAATTGCTGACCGTGACACTTTAGGCTCCCATTTTCTTATCACATTTAAGGCTAATAATCATCTCGACAGGTTCGTTAATCTCTCATTCTCCCTCCCTTACTGCTCTTTTAGGAAGCATATAGTATTTGGAAAGCTTGTCCAAGGTTTTGATGTACTGAAAAAGATGGAAAGAGTGGATGTGGAAGATGGCGTTCCAACTGTTACAGTGAAAATTGTCAATTGTGGCGAGTTTAATGAAGAAAAAAGAAAGATGAATAAAGTTAAAACAGGAAAAAATGCTTCAGATGATGATAGCCATGAAGAAAAGCGAAGAGGAAAGCAGAAAAAATCAAGGGAAAGGAAGAGGAGGAAGAAAAAATATGACACATCCGATTCAGATAGTTCTTCTGATTCAGAATTAGACTCTGACTCTGAGAGTGTTTCTGACACAGATTTGTCATCATCATCGTCTTCTTCTGAAAGTTCTTCCAGTGATGACAGGTCTAGAAAGAGAAAGAGGACTTCTAAGAGAGGGAGAAATAGGCGTGGGAGGAGAAAGGATAAGAGACGTGACCGAAAGAGACGGAGGCATGACAAGAAGTCAAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACGGATACTGAAAGTGATAGCAAGAGCAGAAGCACTTCTGAGCAAGATGGCCTTGATGTTCAAGGAAAAGATCTAAATCGTAAAGGCTTGTCAGTGAAATCTGCTGAAGATGTACCTCAAGCCTCAGATGCCCGCCACCGAAGGAGAGAAGAGGCAGATACGGTGGAAAATGATGGGGAGAGATCCCCTAAGGAGAATGGTGAGCGAAGGAGCAATGGCATTGCTGCTGTGGAATCTAAATCTGACAGAAGCTCGGAAAGACAACCTGATATTGTAGATGACCACCCTGGAAAATCTAGGTCCACTCTCCATTCTTGTCACACCTCATTGATGAGCAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGTATTAGTCCCAGAAAGAGTCGCAGCAAGACCCATAGTGTTAGTCCAAAACGAAGTATGAGCAGGAGTCAAAGTGTTAGTGGAAGCCCGCCTCAAGCACCATTGAGGAGCAGGAGCATCAGTAGAAGTCCTGTTCGAAATGGTAGCAGGAGTGTCAGCAGAAGTCCTGTTAGAAATGGTAGCAGAAGCCCAGGTAGAAGTATTAGCAGGAGCCCAGGTAGGGGAAGGAAAGGTAGGAGTATCAGTAGAAGCCCAGTACGAAGTGGGCCTCAGAGAGGTATTAGCAGAAGCCCCGTGAGATCCAATCCACAAAGAAGTCCAAGCAGGAGCCCACCTAGAAGAGCCTCTAGAAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAGAAGTGTAAGCAGAAGTCCGGTGAGGTCCTCTCGTCAGAGTTTGAGCAGAAGCTCAGGTAGGGCACCTTCTAGGAGGAGTATCAGTCGAAGTCCTCGAGCACCAGCTAGGAATCGAAGGAGCTACTCTAGGAGTCTTACTCCCATCCGAAGGCCCAGGTCACCGGCTTCTGATAGAGGGAGAAGTGCATCAAGAAGTGTTTCTCCAGAAGGGTCTCCAAAGCGCATCAGAAGGGGGCGTGGTTTTAGTGAGCGTTATTCATTTGCTCGAAGATACAGAACACCCTCTGCATCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGTTGAACGTGACAGTGCTCAGATAATTGATTTTGAAGTGCTTGCTTGTGTTGCTAGATATTCAAATTACAGAAGGTATTCTCCTAGGCGCTATAGAAGCCCTCCTAGAGGAAGATCTCCGCTAAGATACAGAAACAGAAGAAGCAGGACTCCATCTGCATCCCGTAGTCCTCGTTACCGTAGTCGTCGTTATAGCCGTAGCCGAAGTCCTATTAGGAGCCGTTCCCCAGTCGAGGGTTCCAGGTCTCGTTTGTCTCCTAGGGTAGTTAGGCGGAGATCTCTTTCAAGGAGCAGATCCCCATCAAAATCAAGGTCCCCTGCTGATTCACAATCCCCGAGAAGAACGAGCAGAGATAGGTCCAGGTCACCTTCTGGTAGTCCAGAAGGGAAGAAGGGTTTGGTTTCTTATGGTGATGGATCTCCAGATTCAGAGAGGTGA 2478 45.68 MTKKKNPLVFLDVSIDGDPREKMVFELFYDVAPKTAENFRALCTGEKGIGPKTGRPLHYKGSFFHRIIGGSMAQAGDFVKRDGTVGESIYGGKFPDELPRLKHDGPGLLSMAIADRDTLGSHFLITFKANNHLDRFVNLSFSLPYCSFRKHIVFGKLVQGFDVLKKMERVDVEDGVPTVTVKIVNCGEFNEEKRKMNKVKTGKNASDDDSHEEKRRGKQKKSRERKRRKKKYDTSDSDSSSDSELDSDSESVSDTDLSSSSSSSESSSSDDRSRKRKRTSKRGRNRRGRRKDKRRDRKRRRHDKKSKRKSKRDLDSLTDTESDSKSRSTSEQDGLDVQGKDLNRKGLSVKSAEDVPQASDARHRRREEADTVENDGERSPKENGERRSNGIAAVESKSDRSSERQPDIVDDHPGKSRSTLHSCHTSLMSRSRSISPRRTMSKSMSISPRKSRSKTHSVSPKRSMSRSQSVSGSPPQAPLRSRSISRSPVRNGSRSVSRSPVRNGSRSPGRSISRSPGRGRKGRSISRSPVRSGPQRGISRSPVRSNPQRSPSRSPPRRASRKSISRSPARVSRSVSRSPVRSSRQSLSRSSGRAPSRRSISRSPRAPARNRRSYSRSLTPIRRPRSPASDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSASPVRSYRYSGRVERDSAQIIDFEVLACVARYSNYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPRYRSRRYSRSRSPIRSRSPVEGSRSRLSPRVVRRRSLSRSRSPSKSRSPADSQSPRRTSRDRSRSPSGSPEGKKGLVSYGDGSPDSER 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20374694 20383858 + Lsi08G011760.1 Lsi08g01176 669102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01176 825 MobiDBLite consensus disorder prediction 419 453 - -
Lsi08g01176 825 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 188 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 MobiDBLite consensus disorder prediction 643 659 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 309 330 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 707 733 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 252 267 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 460 512 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 397 418 - -
Lsi08g01176 825 Gene3D - 1 190 IPR029000 -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 194 217 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 275 308 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 707 825 - -
Lsi08g01176 825 SUPERFAMILY Cyclophilin-like 4 190 IPR029000 -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 356 385 - -
Lsi08g01176 825 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 187 IPR002130 GO:0000413|GO:0003755
Lsi08g01176 825 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 502 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 565 598 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 528 554 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 791 805 - -
Lsi08g01176 825 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 502 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 606 622 - -
Lsi08g01176 825 MobiDBLite consensus disorder prediction 194 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01176 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 508.834
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02252 Lsi-Chr2:28986366 Lsi08g01176 Lsi-Chr8:20374694 1.29E-11 dispersed
Lsi08g01176 Lsi-Chr8:20374694 Lsi10g00310 Lsi-Chr10:4944910 9.95E-48 dispersed
Lsi08g01176 Lsi-Chr8:20374694 Lsi11g01025 Lsi-Chr11:17432350 5.99E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01176 Lsi_Chr08 FPKM 9.087379 10.261158 7.813209 7.084535 8.082327 4.993521 11.078794 7.526696 4.406539 4.253956