Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01178 ATGGAGTCTCCTAAAACTGATCATCTTACTTCCACACTAACCACCGTCTCAGGAGCCACAGGCACTCCAACTTTTCCCACTTCTCGGTCGCAATCCCCAGTTTACTTCGTTAATAACTTATTTCCGATAGAGCCCGGCAGGAGTGATTTTGCAGCCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTTTCTCCTCCAAATGTTGAATCAAATCTTTTGAAAAGGACTCACAATGCTCAGTCGTCTAATACTGAATTGGTTGCCGAATCACAAGAATGTAACAGTAAGGATCCATGTAGTATCTATCAGGATTGCTTGGATACTAGACCTCGATCTTTTCATGAATGCAATACCAAAGAAAAATTTGTGGGAGCTTTTCAGCCTCTATCAGTTCCTCAACCCCTTCACGGAATGAGTCAACATTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAATTTTCCCTCAAATTTTACAAGTTACGTGAAGGCAACATCATATGATCCAGAATTCTCTGTTTTGAACTTAGATGCATCATTTAATAACAGAGTATCAGCCAATTCATCTCGTTCCTTGCGTACACTGCTACATCCTGATTCTGTTGGCAATCCTCGCTTGGGAATTTCCAAACCTTCAGGTATAGGGTTGCACCTAAATAACATCATTGATACTGTAATGAAGAAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGTTGTCACATACTGAAAAATGAAAAAACCTGCTCAGAAAATGTCTCATTGACAAGTTCCATCACTTTAAAGTCCTGCCATGCTGATAAAGCTGAGAAATTTAAAACTCCATATGAGACAAGAAATTTTGAATCCAACAAACCTTCTAACCTTGAGAAGATCAATAATTTTCTTCCCAAAAGGAAAAGGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTCGTGAGTCTTGTTCTTGTCAAGTGTGCTTTAACAAACCTGAGAATGTACATATTGTTCTTGAAAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCAAGGGTTATTGAGGACCGTAACGAGCTTCCAGCTAATGTTGGATGCACGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTGGCAACTGGTCGTGCTGATGTCGGAAGAAGGCTCGTAGGCAGGTTGATTGATGACTATGATGCGAGAGCATTAAGGAAAGATGTTTTGCATTCTGAGTTTTATGGTCAACAACACAAGTTCGCTCCCCAAACACCATCATTTCAGTACTCAGAAAGATGTCTCCCTTCGCCAGAATTTGGCTCTACGAGCTCATCTTCTCCAGATTACAGTGACATGTTCGTAGAAACAAAGACGGACATATTAGATGTAAATTACTTTAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACTCCATTCATACCATCCAAGCCAAGGGGTCGTACAAACATTTCACGTAGCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGCCGTCATTCACCGGACAGTCCCCTAGTTCAGGCAGGCAACATGACATCCACTAATTGTATTAATGGAAGCCCTCCAGAGAAAAAGGTAGTTTTGCCTCCTCTTTACGGTAACGAAAATGAGGTAGGGATGAATAATTCTTTGGGGATGTTGAAGAGCCGTAGATATATCTTGAAGTCAATGCCTCCCTTCCCGCCCCTCACCCCACGCAACAAATGA 1770 42.26 MESPKTDHLTSTLTTVSGATGTPTFPTSRSQSPVYFVNNLFPIEPGRSDFAAPGFTGLESSPFVFSPPNVESNLLKRTHNAQSSNTELVAESQECNSKDPCSIYQDCLDTRPRSFHECNTKEKFVGAFQPLSVPQPLHGMSQHYLQFKEASANAPLNNFPSNFTSYVKATSYDPEFSVLNLDASFNNRVSANSSRSLRTLLHPDSVGNPRLGISKPSGIGLHLNNIIDTVMKKHGPIAGLGMQGVSCHILKNEKTCSENVSLTSSITLKSCHADKAEKFKTPYETRNFESNKPSNLEKINNFLPKRKRYCDCFAAGMYCRESCSCQVCFNKPENVHIVLERRHQIESRDPFAFAPRVIEDRNELPANVGCTDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLIDDYDARALRKDVLHSEFYGQQHKFAPQTPSFQYSERCLPSPEFGSTSSSSPDYSDMFVETKTDILDVNYFKWQQMNCDNGGTSSTPFIPSKPRGRTNISRSGELRIGSSSILCRHSPDSPLVQAGNMTSTNCINGSPPEKKVVLPPLYGNENEVGMNNSLGMLKSRRYILKSMPPFPPLTPRNK 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20397358 20402937 - Lsi08G011780.1 Lsi08g01178 669104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 366 587 - -
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 98 - -
Lsi08g01178 589 SMART CXC_2 305 334 IPR033467 -
Lsi08g01178 589 ProSiteProfiles CRC domain profile. 298 384 IPR005172 -
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 366 587 IPR044522 GO:0003700
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 133 367 IPR044522 GO:0003700
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 98 IPR044522 GO:0003700
Lsi08g01178 589 MobiDBLite consensus disorder prediction 1 28 - -
Lsi08g01178 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 307 331 IPR005172 -
Lsi08g01178 589 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 133 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01178 K21776 LIN54; protein lin-54 - pvy:116113015 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01178 Lsi-Chr8:20397358 Lsi11g00253 Lsi-Chr11:2562915 1.31E-08 dispersed
Lsi08g01178 Lsi-Chr8:20397358 Lsi09g01305 Lsi-Chr9:20917935 3.21E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25797 PF03638 TCR 4.30E-06 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01178 Lsi_Chr08 FPKM 20.064545 23.118315 19.262011 18.340277 15.937876 15.136994 16.395428 18.668419 18.935066 19.692488