Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01180 ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAGCTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACTTCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAA 468 56.41 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20409473 20410706 + Lsi08G011800.1 Lsi08g01180 669106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01180 155 ProSiteProfiles Zinc finger RanBP2 type profile. 117 148 IPR001876 -
Lsi08g01180 155 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 153 - -
Lsi08g01180 155 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Lsi08g01180 155 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lsi08g01180 155 PANTHER ZINC FINGER PROTEIN 1 153 - -
Lsi08g01180 155 Gene3D - 53 90 - -
Lsi08g01180 155 Gene3D - 2 32 - -
Lsi08g01180 155 Gene3D - 110 149 - -
Lsi08g01180 155 SUPERFAMILY Ran binding protein zinc finger-like 111 149 IPR036443 -
Lsi08g01180 155 ProSitePatterns Zinc finger RanBP2-type signature. 62 83 IPR001876 -
Lsi08g01180 155 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lsi08g01180 155 ProSitePatterns Zinc finger RanBP2-type signature. 121 142 IPR001876 -
Lsi08g01180 155 ProSiteProfiles Zinc finger RanBP2 type profile. 58 89 IPR001876 -
Lsi08g01180 155 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Lsi08g01180 155 Pfam Zn-finger in Ran binding protein and others 117 146 IPR001876 -
Lsi08g01180 155 Pfam Zn-finger in Ran binding protein and others 58 87 IPR001876 -
Lsi08g01180 155 SMART zf_4 60 86 IPR001876 -
Lsi08g01180 155 SMART zf_4 5 29 IPR001876 -
Lsi08g01180 155 SMART zf_4 119 145 IPR001876 -
Lsi08g01180 155 SUPERFAMILY Ran binding protein zinc finger-like 54 89 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01180 - - - csv:101219235 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00609 Lsi-Chr1:4900811 Lsi08g01180 Lsi-Chr8:20409473 6.56E-07 dispersed
Lsi06g00946 Lsi-Chr6:19397450 Lsi08g01180 Lsi-Chr8:20409473 6.77E-10 dispersed
Lsi08g01180 Lsi-Chr8:20409473 Lsi09g00684 Lsi-Chr9:7756385 4.15E-06 dispersed
Lsi02g02729 Lsi-Chr2:33602016 Lsi08g01180 Lsi-Chr8:20409473 5.65E-12 wgd
Lsi07g00478 Lsi-Chr7:5032676 Lsi08g01180 Lsi-Chr8:20409473 1.29E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01180 Lsi_Chr08 FPKM 3.492257 4.90663 10.479891 11.726566 17.127428 14.693784 16.525284 4.662745 5.23988 5.965949