Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01189 ATGGCAAAAATGCACTTTACTCATACGTGTTCCGATGAAACGTTGTTCTATCGCACGTTTTGGCCGCCGACTGCGACCGAGCTTCACGAATGCGGTGTTGTTTTCAGGACGAAGAAGGAGATCAGAAAGAAATGTGCTGTGGACGTAGCGTTTATAGACTATGATGGCTATCTAGAACTGCCGCAAATCATCATATACGATGGCTTTGAAACGCGTGTGAGGAACTTGATAGCTTATGAGCAATGCCATGCTGGAGAAATGAGGAATGAGGTGAGCAACTTTGCTGTGTTTATGCAATACTTGGTCCAAACAGAGCAAGACGTGAAATTGCTGATTGAAGATGGGATCATACAGAACAACTTGGGTAGTATTAAAGAGGTTACCCAATTGTTCAATAACCTTTGTAAGAACGTTGCTCCTGGTAACAATTTCTATAACCATGAGTGTAAAAGAATGAAAGAATACTGCAAGCGTCGTCGCCATCGGTGGATGGCGTCGTTGCGACGCAATTATTTTAACACGCCCTGGGCATGTGCTTCCTCCATTGCTGCCATCCTACTCCTTTCTCTCACTCTCGTGCAAACGGTGGAATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTGTTGTGGGGTTTGAAGGCATTTCTTAAGGTTGAGCTTAAGGAAGGTCCTCTGGACCATAATAGTGAGATTGAAGCACCTCAAGAAAACGTCTTATCTAACAACGTGGCAGCAGAAATTAGTGAGGATGAAGATCTTTGTGGTGATGTTGTGATATCCATCGAAGGCATGTTGAAAAAATTGCCTCCTGTTAATGAAAAAAGTAGCATCTATCGAGTTTCCAAACAGTTACGCGACATGAATCCTAAAGCTTACACCCCTCAAATTATTTCCATAGGCCCTTTTCACCATCGATGTGATGAAAATGATAAAAATGATTTTAGAGCCACGGAACAATATAAGCTTCAAGGTCTTAATAAATTTCTACGCCGTATCACTAATAAGATCATGAAATATCCATTGGAGGAGGACGTTGCGGAAAATAGATTGTTGGAGGACCTCAACTTGGAAACCAAATCATTGAAGTTCCTCGTGAAAAAGGCTCATTGTTGGATGAAAGAAGCCCGCAATTGCTATACAGAACCCATAGACATGAACGACCGTAAGTTTCTTATAATGATGCTTGTGGATGCCTGTTTCATAGTGGAATTTTTTATGCTAAAATGTGACGGCAAATTTGATTCACTATGTCATAAGTCGTCCGATCAAATTAAAGGCCATGTGGATCTTTTATTACCCTACCCAGAAATATTCCTAGATATATTATTTGACTTGATAAAGTTGGAAAATCAAGTTCCTTTCTTTCTTCTCCAAAATCTGTTTAACCTAATCTTAATAGAAGATAGTAGCCCCAGGACTTTTAAAGATATTACATACTCTGCTCTTGGTTTTGGTGAGAACAAGTATAATTTCTTAAGTTTCTTCTACGGACTCTTTCTAGCTCGTTGGCAGAAGCAGCATGAGGAAAACAATGAGCAGAATGAGGAAAACAGTGAGACGAAGAAGAATAAAGATTTCTTAAGTTTCTTTCGTGTGCCCTTGTGTTGTCTTTGGAATAAGAAGCCTGATGAGAATAAAAGTGAGGAAGGGAGGTTGATTCCTCCTTCCATAACTGAGCTCTGTGAGGCTGGTGTCACCATCAAGAAGGCAGAAAACACCAAATATTTGATGAACATAACCTTCAAAAATGGTGTTTTGGAAATCCCACCTTTACATATTTATGATGACTTTGAACTTATTTTGCGAAACATGGTAGCATTTGAACAATTCTCCACAGAAAATGATAATCACTTATATGTAACCCAATATGTCTCATTTTTTGATGATTTGATAAGTACAAAGAAAGACGTGAGTTTCCTTATGAAGGCCGGAGTCATAATCAATAATATTGGCGGCAGCAATACAGAAGTTTCAAATCTATTTAACAACCTCTGTAAATTTGTCAAATACCCAAATTTTTCCCAGTTCGACCCTATCAGCAAAGCTTTGGGTGAACACTGCAATGGATGTTGGAACAATGCCAAAGCTTCACTCAAACATAACTATTTCAATTCCCCATGGGCTATTATCTCCTTATTTGCTGCATCCTTCCTCATTCTTCTCACTCTTCTTCAAACCATTTTCTCCGCTATCTCCACATTTCATAGCTAG 2211 39.48 MAKMHFTHTCSDETLFYRTFWPPTATELHECGVVFRTKKEIRKKCAVDVAFIDYDGYLELPQIIIYDGFETRVRNLIAYEQCHAGEMRNEVSNFAVFMQYLVQTEQDVKLLIEDGIIQNNLGSIKEVTQLFNNLCKNVAPGNNFYNHECKRMKEYCKRRRHRWMASLRRNYFNTPWACASSIAAILLLSLTLVQTVEFSVNGVLMLALLWGLKAFLKVELKEGPLDHNSEIEAPQENVLSNNVAAEISEDEDLCGDVVISIEGMLKKLPPVNEKSSIYRVSKQLRDMNPKAYTPQIISIGPFHHRCDENDKNDFRATEQYKLQGLNKFLRRITNKIMKYPLEEDVAENRLLEDLNLETKSLKFLVKKAHCWMKEARNCYTEPIDMNDRKFLIMMLVDACFIVEFFMLKCDGKFDSLCHKSSDQIKGHVDLLLPYPEIFLDILFDLIKLENQVPFFLLQNLFNLILIEDSSPRTFKDITYSALGFGENKYNFLSFFYGLFLARWQKQHEENNEQNEENSETKKNKDFLSFFRVPLCCLWNKKPDENKSEEGRLIPPSITELCEAGVTIKKAENTKYLMNITFKNGVLEIPPLHIYDDFELILRNMVAFEQFSTENDNHLYVTQYVSFFDDLISTKKDVSFLMKAGVIINNIGGSNTEVSNLFNNLCKFVKYPNFSQFDPISKALGEHCNGCWNNAKASLKHNYFNSPWAIISLFAASFLILLTLLQTIFSAISTFHS 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20463335 20472267 - Lsi08G011890.1 Lsi08g01189 669115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01189 736 PANTHER BNAC04G53230D PROTEIN 265 730 - -
Lsi08g01189 736 PANTHER BNAC04G53230D PROTEIN 24 197 - -
Lsi08g01189 736 Coils Coil 500 524 - -
Lsi08g01189 736 Pfam Plant protein of unknown function 277 721 IPR004158 -
Lsi08g01189 736 Pfam Plant protein of unknown function 22 189 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01189 - - - bhj:120076513 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01181 Lsi-Chr8:20420990 Lsi08g01189 Lsi-Chr8:20463335 1.66E-33 dispersed
Lsi08g01189 Lsi-Chr8:20463335 Lsi08g01191 Lsi-Chr8:20488614 7.62E-27 dispersed
Lsi08g01189 Lsi-Chr8:20463335 Lsi08g01198 Lsi-Chr8:20553056 5.47E-36 proximal
Lsi08g01188 Lsi-Chr8:20453692 Lsi08g01189 Lsi-Chr8:20463335 2.40E-32 tandem
Lsi08g01189 Lsi-Chr8:20463335 Lsi08g01190 Lsi-Chr8:20474947 9.47E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g454 . . . . . . . . Cmo05g00404 . . Cma05g00393 . . Sed08g1315 . . Bhi04g00983 Tan02g2709 Cmetu01g0189 . Hepe10g0266 . Lcy13g1768 . . . . . . . . . . . . . . Cme03g01633 . . . . . . . . . . . . . . . Cpe11g00336 . . . . . . . . Cla08g01321 Cam08g1782 Cec08g1360 Cco08g1487 Clacu08g1476 . Cre08g1265 Lsi08g01189 . Chy03g01135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000204 0 10 0 0 0 5 0 11 3 11 4 4 8 15 11 14 4 0 7 7 7 2 2 6 7 13 6 8 4 2 171
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01189 Lsi_Chr08 FPKM 10.508252 11.553381 17.654825 17.41715 29.353832 31.190853 28.3197 30.932058 33.592136 30.61529