Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01193 ATGCAGGAGCAAGCGACGAGTTCAGCCGCCGCTAGTTCTTTGCCTTCGAGCAGTGAAAGATCCTCTAGCTCTGCGCTTCATCTCGAAGTTAAAGAAGGAATGGAGAGCGATGAGGAGATCCGGAGAGTGCCGGAGATAGGCGGTGAATCGGCCGGTACATCGGCTTCCGGGAGGGATACTGGTTCGGTCGCCGGTCCGGACCGGGTTCAAGTTTCTCGGGAGGGTCAAAGGAAAAGAGGGAGAAGTCCGGCTGATAAAGAAAGCAAGAGACTGAAG 276 55.43 MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDTGSVAGPDRVQVSREGQRKRGRSPADKESKRLK 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20510407 20511034 + Lsi08G011930.1 Lsi08g01193 669119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01193 92 MobiDBLite consensus disorder prediction 1 24 - -
Lsi08g01193 92 MobiDBLite consensus disorder prediction 30 45 - -
Lsi08g01193 92 MobiDBLite consensus disorder prediction 71 92 - -
Lsi08g01193 92 MobiDBLite consensus disorder prediction 1 92 - -
Lsi08g01193 92 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 92 IPR044280 GO:0000981|GO:0045944
Lsi08g01193 92 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01193 K16241 HY5; transcription factor HY5 - csv:101218051 151.754
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02144 Lsi08g01193 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02144 Lsi-Chr4:28560458 Lsi08g01193 Lsi-Chr8:20510407 1.08E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g458 . . Bda01g00765 . Bpe02g01240 . . . Cmo05g00389 Cmo12g00279 Cma01g01495 Cma05g00390 . Car12g00311 Sed07g1964 Cpe07g00288 . Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01750 Cam05g1863 Cec05g1875 Cco05g1939 Clacu05g1854 Cmu05g1735 Cre05g1867 Cone4ag1802 . Cone17ag1030 . Lsi04g02144 Csa03g04347 Chy04g00355 Cme03g01624 Blo17g00025 Blo18g00033 Bda01g00995 Bda13g01268 Bpe14g00575 . Bma01g01283 Bma02g00029 . Cmo01g01551 . . Cma12g00329 . Car05g00331 Cpe11g00334 Cpe02g00460 . . . . . . . Cla08g01323 Cam08g1785 Cec08g1363 Cco08g1490 Clacu08g1479 . Cre08g1268 Lsi08g01193 . Chy03g01131 Cme04g00394
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004403 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01193 Lsi_Chr08 FPKM 25.963865 30.082497 16.775503 19.585152 5.412524 6.272791 5.577883 1.456912 1.568201 1.524509
Lsi08g01193 Lsi_Chr00 FPKM 11.763566 13.331127 20.711554 21.327225 0.0 0.0 0.0 0.0 0.0 0.0