Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01195 ATGGCTCTTCAACACAATAAGCCAACAACAATGGCTCTCTTCTTCTTCTTCTTATTCTTCAAACACATTTCCATGGCTCTTGCAGACATTGGCACTGCCACACCCTATGGCCCCCCATATCTTCCTACTGAGTGTAATGGAAATAGTCTTGAACAGTTTCCGTCTGGCAACCTTTTCGTGGCGGTCAACGAAGGGTTGTGGGATAACGGTGCGGCCTGCGGTCGACGATATAGATTACGATGTTTGAGCGGCCGAAATCGCCCGTGCAAGACCGACATCATCGAAGTTCAAGTCGTGAACTTTTGCCCCAAGTCTCCATGCCCCTCTTCCTTTCTCATGTCCAAAGAGGCTTTCTCCGCCATCTCTCGCTTTCCTAATACTAAACTCAACGTCGAATACATTGAGTACGTAACATTCTCTCTTATTTTAAATATGTCATAA 441 46.03 MALQHNKPTTMALFFFFLFFKHISMALADIGTATPYGPPYLPTECNGNSLEQFPSGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISRFPNTKLNVEYIEYVTFSLILNMS 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20525264 20525810 + Lsi08G011950.1 Lsi08g01195 669121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01195 146 Gene3D - 29 136 IPR036908 -
Lsi08g01195 146 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 133 IPR007112 -
Lsi08g01195 146 SUPERFAMILY Barwin-like endoglucanases 16 133 IPR036908 -
Lsi08g01195 146 SMART dpbb_1 60 133 IPR007112 -
Lsi08g01195 146 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 15 135 - -
Lsi08g01195 146 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 15 135 - -
Lsi08g01195 146 Pfam Lytic transglycolase 61 133 IPR009009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01195 - - - csv:101208867 237.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00396 Lsi-Chr7:4234573 Lsi08g01195 Lsi-Chr8:20525264 3.57E-20 dispersed
Lsi08g01195 Lsi-Chr8:20525264 Lsi11g00293 Lsi-Chr11:3032367 1.58E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g463 . . . . . . . . . Cmo12g00281 . . . Car12g00313 . Cpe07g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00332 . . . . . . . . . . . . . . . . . . Lsi08g01195 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01195 Lsi_Chr08 FPKM 24.66279 23.25507 27.866316 27.816967 41.297436 53.487724 35.893364 20.529701 23.406902 20.492205