Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01196 | ATGCAATCCCAATTCACAAAAACCAAGCTGTTACGTGTAATCAACAATGTTTCAGCTTCTACAACTAACCCTCGTGCAGCGGAGCAGAACTGTTTAGCCCTGCTTCAGGCCTGTAACGCGCTACCGAAGCTCACCCAAATCCATACTCACATTATCAAGTTGGGCCTCCACAACAACCCGCTCGTTCTCACCAAATTCGCCTCCATTTCTTCTTTTATTCATGCTACTGATTATGCTGCCTGTTTCTTGTTCTCTGCCGAAGCTGATACTCGGCTTTACGATGCGTTTCTTTTCAATACCCTCATCAGAGCCTATGCTCAAACTGGTCACTCGAAGGACAAAGCCTTGTCTTTGTACGGTATAATGCTTCACGATGGGATTTTGCCTAATAAGTTCACTTACCCATTTGTCTTGAAGGCTTGTGCTGGCCTTGAGGTTTTGAATTTGGGCCAATCGGTTCATGGGTCGGTGGTGAAGTTTGGGTTTGATCGTGATATTCATGTTCAGAACACTATGGTTCATATGTACTCCTGTTGCGCCGGTGGGATAAATTCTGCCCGGAAGTTGTTTGATGAAATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGTGGGTATGCTCGTGTAGGGCGTTCCACTGAAGCAGTGGCTTTATTTAGGGAGATGCAAATGGCGGAGGTTTGCCCAGATGAGATCACTATGGTTTCCATGCTTTCTGCTTGTACAGATTTGGGCGCCCTTGAACTTGGGAAGTGGATTGAAGCTTATATAGAGAGACAAGGAATTCAGAAACCAGTAGTGGTTACCAATGCACTTATTGATATGTTTGCAAAGTGTGGTGATATTAGTAAAGCATTGAAGTTATTTAGAACTATGAATGAGAAAACAATAGTTTCCTGGACTTCTGTTATTGTTGGCATGGCAATGCATGGCCGTGGTCAAGAGGCCATTTGTTTATTTGAGGAGATGATAGGTTCTGGTGTTCCTCCGGACGGCGTCGCCTTTATCGGCTTGCTTTCTGCCTGTAGCCATTCGGGACTAGTAGAAAGAGGTAGAGAATATTTCAGTTCTATGATGAAGAAATACAAACTTGTTCCTAAGATAGAACACTATGGATGCATGGTGGACATGTATTGCAGGACTGGACTTGTGAAGGAGGCTCTCGAGTTCGTACGTAACATGCCGATTGAGCCAAATCCAGTAATCTTACGAACACTAGTCAGTGCCTGCCGTGGTCACGGTGAATTCAAGCTTGGAGAAAAAATCACCAAACTGTTAATGAGACATGAGCCTTTGCATGAATCAAACTATGTCTTGCTCTCTAACATTTATGCAAAAATGCTTAGTTGGGAGAAGAAGACCAAAATTAGAGAGGTGATGGAAGTGAAAGGCATGAAAAAGGTTCCAGGGAGCACCATGATTGAGATTGATAACGAAATCTATGAATTTGTTGCTGGAGATAAGTCTCATAAACAGTTCAAAGAAATCTATGAAATGGTGGATGAGATGGGGAGAGAAATGAAGAAATCTGGATATCGTCCTTCGACATCGGAGGTTTTGCTCGATATCAACGAAGAGGACAAAGAAGATACTTTGAATAGACATAGTGAAAAACTAGCGATTGCATTTGGGCTTCTTAGTACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCAACGATTGCCACTCCGCTTCCAAGTTCATCTCTAAGATTTATGATCGCGAAATCATAATGAGAGACCGCAACCGGTTTCACCACTTCAAGTCTGGGCAGTGCTCATGTGGAGATTTCTGGTGA | 1818 | 43.45 | MQSQFTKTKLLRVINNVSASTTNPRAAEQNCLALLQACNALPKLTQIHTHIIKLGLHNNPLVLTKFASISSFIHATDYAACFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALSLYGIMLHDGILPNKFTYPFVLKACAGLEVLNLGQSVHGSVVKFGFDRDIHVQNTMVHMYSCCAGGINSARKLFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERQGIQKPVVVTNALIDMFAKCGDISKALKLFRTMNEKTIVSWTSVIVGMAMHGRGQEAICLFEEMIGSGVPPDGVAFIGLLSACSHSGLVERGREYFSSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMRHEPLHESNYVLLSNIYAKMLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQFKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLSTPPGTPIRIVKNLRVCNDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW | 605 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 20533459 | 20535276 | + | Lsi08G011960.1 | Lsi08g01196 | 669122 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01196 | 605 | Pfam | PPR repeat | 271 | 297 | IPR002885 | - | |
| Lsi08g01196 | 605 | Pfam | PPR repeat | 372 | 396 | IPR002885 | - | |
| Lsi08g01196 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 94 | 129 | IPR002885 | - | |
| Lsi08g01196 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 297 | IPR002885 | - | |
| Lsi08g01196 | 605 | Pfam | E+ motif | 482 | 509 | IPR046849 | - | |
| Lsi08g01196 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Lsi08g01196 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 199 | 233 | IPR002885 | - | |
| Lsi08g01196 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 333 | IPR002885 | - | |
| Lsi08g01196 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 396 | IPR002885 | - | |
| Lsi08g01196 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 97 | 130 | IPR002885 | - | |
| Lsi08g01196 | 605 | TIGRFAM | PPR: pentatricopeptide repeat domain | 271 | 295 | IPR002885 | - | |
| Lsi08g01196 | 605 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Lsi08g01196 | 605 | Pfam | E motif | 415 | 477 | IPR046848 | - | |
| Lsi08g01196 | 605 | Pfam | PPR repeat family | 298 | 345 | IPR002885 | - | |
| Lsi08g01196 | 605 | Pfam | PPR repeat family | 94 | 142 | IPR002885 | - | |
| Lsi08g01196 | 605 | Pfam | PPR repeat family | 197 | 243 | IPR002885 | - | |
| Lsi08g01196 | 605 | Gene3D | Tetratricopeptide repeat domain | 273 | 484 | IPR011990 | GO:0005515 | |
| Lsi08g01196 | 605 | Gene3D | Tetratricopeptide repeat domain | 97 | 266 | IPR011990 | GO:0005515 | |
| Lsi08g01196 | 605 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 29 | 591 | - | - | |
| Lsi08g01196 | 605 | Pfam | DYW family of nucleic acid deaminases | 513 | 605 | IPR032867 | GO:0008270 | |
| Lsi08g01196 | 605 | PANTHER | - | 29 | 591 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01196 | - | - | - | csv:101208624 | 1144.03 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00486 | Lsi-Chr4:4508101 | Lsi08g01196 | Lsi-Chr8:20533459 | 5.46E-161 | dispersed | |
| Lsi06g01455 | Lsi-Chr6:25113414 | Lsi08g01196 | Lsi-Chr8:20533459 | 2.41E-122 | dispersed | |
| Lsi08g01196 | Lsi-Chr8:20533459 | Lsi06g00945 | Lsi-Chr6:19384143 | 3.70E-75 | dispersed | |
| Lsi01g00104 | Lsi-Chr1:1085424 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.63E-26 | transposed | |
| Lsi01g00314 | Lsi-Chr1:2780525 | Lsi08g01196 | Lsi-Chr8:20533459 | 9.78E-161 | transposed | |
| Lsi01g00939 | Lsi-Chr1:7596616 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.57E-180 | transposed | |
| Lsi02g01333 | Lsi-Chr2:17830471 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.30E-165 | transposed | |
| Lsi02g02382 | Lsi-Chr2:30498569 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.14E-27 | transposed | |
| Lsi03g01687 | Lsi-Chr3:28125838 | Lsi08g01196 | Lsi-Chr8:20533459 | 2.86E-167 | transposed | |
| Lsi04g00422 | Lsi-Chr4:4049941 | Lsi08g01196 | Lsi-Chr8:20533459 | 2.10E-26 | transposed | |
| Lsi04g00461 | Lsi-Chr4:4392187 | Lsi08g01196 | Lsi-Chr8:20533459 | 5.04E-49 | transposed | |
| Lsi04g00463 | Lsi-Chr4:4393389 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.19E-06 | transposed | |
| Lsi05g00956 | Lsi-Chr5:16710070 | Lsi08g01196 | Lsi-Chr8:20533459 | 8.96E-126 | transposed | |
| Lsi05g01055 | Lsi-Chr5:18069751 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.91E-23 | transposed | |
| Lsi05g01625 | Lsi-Chr5:23898239 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.85E-58 | transposed | |
| Lsi06g00123 | Lsi-Chr6:1200861 | Lsi08g01196 | Lsi-Chr8:20533459 | 6.26E-169 | transposed | |
| Lsi06g01463 | Lsi-Chr6:25165708 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.03E-153 | transposed | |
| Lsi09g01131 | Lsi-Chr9:18185013 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.52E-133 | transposed | |
| Lsi11g00858 | Lsi-Chr11:10861397 | Lsi08g01196 | Lsi-Chr8:20533459 | 4.98E-145 | transposed | |
| Lsi02g02703 | Lsi-Chr2:33403074 | Lsi08g01196 | Lsi-Chr8:20533459 | 1.96E-06 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi4g465 | . | . | . | . | . | . | . | . | . | Cmo12g00282 | . | . | . | Car12g00314 | . | . | . | Bhi04g00972 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bda13g01266 | Bpe14g00577 | . | . | . | . | . | . | . | Cma12g00333 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01196 | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000117 | 7 | 10 | 4 | 7 | 7 | 7 | 7 | 7 | 6 | 8 | 6 | 5 | 7 | 4 | 3 | 8 | 6 | 7 | 7 | 7 | 7 | 7 | 6 | 6 | 2 | 5 | 4 | 4 | 5 | 11 | 187 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lsi08g01196 | Lsi_Chr08 | FPKM | 2.384765 | 2.398807 | 10.881441 | 11.628983 | 14.422945 | 13.468188 | 12.271332 | 4.097748 | 3.71531 | 3.351929 |