Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01201 | ATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCCGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAACCGAAAGTTGAACGACCTCCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACACAAGCGGATTCTTGTGGCGACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTGAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACTTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACAGTATTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGGTTGGTGAGGGTGGGTTCACATGTCATTGTGGTTTGA | 1113 | 42.41 | MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSIAIIDVEIFSIEYRLPRLVRVGSHVIVV | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 20561158 | 20564827 | - | Lsi08G012010.1 | Lsi08g01201 | 669127 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01201 | 370 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 195 | 340 | IPR001650 | - | |
| Lsi08g01201 | 370 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 32 | 311 | IPR027417 | - | |
| Lsi08g01201 | 370 | CDD | DEADc_DDX39 | 1 | 169 | - | - | |
| Lsi08g01201 | 370 | SMART | helicmild6 | 219 | 300 | IPR001650 | - | |
| Lsi08g01201 | 370 | Pfam | DEAD/DEAH box helicase | 2 | 153 | IPR011545 | GO:0003676|GO:0005524 | |
| Lsi08g01201 | 370 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 167 | IPR014001 | - | |
| Lsi08g01201 | 370 | Pfam | Helicase conserved C-terminal domain | 193 | 300 | IPR001650 | - | |
| Lsi08g01201 | 370 | Gene3D | - | 1 | 175 | IPR027417 | - | |
| Lsi08g01201 | 370 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 1 | 339 | - | - | |
| Lsi08g01201 | 370 | Gene3D | - | 176 | 344 | IPR027417 | - | |
| Lsi08g01201 | 370 | SMART | ultradead3 | 1 | 183 | IPR014001 | - | |
| Lsi08g01201 | 370 | CDD | SF2_C_DEAD | 180 | 309 | - | - | |
| Lsi08g01201 | 370 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 1 | 339 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g02028 | Lsi-Chr5:27272239 | Lsi08g01201 | Lsi-Chr8:20561158 | 2.31E-67 | dispersed | |
| Lsi08g01201 | Lsi-Chr8:20561158 | Lsi09g00051 | Lsi-Chr9:428363 | 9.61E-53 | dispersed | |
| Lsi08g01201 | Lsi-Chr8:20561158 | Lsi07g00592 | Lsi-Chr7:6285937 | 3.40E-67 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01201 | K12812 | - | csv:101217346 | 679.863 |