Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01201 ATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCCGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAACCGAAAGTTGAACGACCTCCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACACAAGCGGATTCTTGTGGCGACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTGAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACTTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACAGTATTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGGTTGGTGAGGGTGGGTTCACATGTCATTGTGGTTTGA 1113 42.41 MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSIAIIDVEIFSIEYRLPRLVRVGSHVIVV 370
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 20561158 20564827 - Lsi08G012010.1 Lsi08g01201 669127
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01201 370 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 195 340 IPR001650 -
Lsi08g01201 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 311 IPR027417 -
Lsi08g01201 370 CDD DEADc_DDX39 1 169 - -
Lsi08g01201 370 SMART helicmild6 219 300 IPR001650 -
Lsi08g01201 370 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Lsi08g01201 370 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Lsi08g01201 370 Pfam Helicase conserved C-terminal domain 193 300 IPR001650 -
Lsi08g01201 370 Gene3D - 1 175 IPR027417 -
Lsi08g01201 370 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 1 339 - -
Lsi08g01201 370 Gene3D - 176 344 IPR027417 -
Lsi08g01201 370 SMART ultradead3 1 183 IPR014001 -
Lsi08g01201 370 CDD SF2_C_DEAD 180 309 - -
Lsi08g01201 370 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 339 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02028 Lsi-Chr5:27272239 Lsi08g01201 Lsi-Chr8:20561158 2.31E-67 dispersed
Lsi08g01201 Lsi-Chr8:20561158 Lsi09g00051 Lsi-Chr9:428363 9.61E-53 dispersed
Lsi08g01201 Lsi-Chr8:20561158 Lsi07g00592 Lsi-Chr7:6285937 3.40E-67 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01201 K12812 - csv:101217346 679.863