Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01204 ATGGAGGAATATCCGAGTTTTCCTGTTTGTTCGACGCATTTTCAAGGAAAAGCTGGGATCTTTTTCTCTTTCAACTCTGTTGCAAGAGACAAATGCCGCGCTTGCTTCATGGGACGCTTCACGCCGATATATATGGAATCGACAGGCTTCAAACTGGATGCCCTATTTTCTGCGGGAAGAACTTATTACGAAGACATCCTTAACGATTCGACCAAAAAGTTTCTTGCTGGAGTGAAGAGACGCATCCTTTGCCGTCCCGAGATTGTTGGATCTAAAATGTATGCGACAGTCGATCTTGACAAGGCTAGAGTTGGCCGGACGAGAATAGTGGATCAACCATACGGTCCTCAGTGGAACAATCATTTTCGTATATATTGTGCTCATACAGTGTCACATGTTATATTCACAATTAAAGATGGAGATGTAATTGGTGCAACATTAATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATTTGTATATGAGAAATGGGTTGAAATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAAAATCCATGTAAAGTTGCAATTTTCAAGTGTTAACGAAGACAGAAACTGGTCTCGAGGAATCCCAGATCCAAAGTTCGGTGGTGTACCTTTCACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGTTCATGTTTTGAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACATAGGTGTTGGGAGGACATTTTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATAAGAGACCGAGAAAGAAGACAGACAGGAGAGGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAAAAAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAAGGGCTCGAAGGTACGTTGCGTTTTGTGTCCACGGAATCCTGATGTTGGTAGAAGTATAATTCAGGGGTTTGAGACTGCTACAATGTTTACTCATCACCAAAAAACAGTTGTCCTTGATAGTGAAATAGCTGGTGGGGGAACAGAGAAAAGAAGGATCGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATACCGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGTGGTCCTAGGGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCCGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTAGAAACAACTGGTTGATTCCAATGCAAAAGCTTGAAGAAACCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACATGGAATGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGTTGGCTTTCCAGATACACCTGAAGATGCATCCAAAGTAGGCCTTGTAAGTGGGAAGGATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCTAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAAATGGTATGAGGGTAGAAGAAATCAACGCATTGCATCTTATTCCAAAGGAGATCTCACTGAAGATTGTGAGCAAGATTGAAGCTGGAGAGAGATTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCTATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTCGATGCAAATCCTAAAGATTACCTGACATTCTTCTGCCTTGGCAATCGGGAGAAGAAAAGAACGGGAGAATATGTACCACCAGAGAAACCAGAACCCAATTCGGATTATGCTCGGGCGCAAGAGTTCCGACGTTTTATGATCTACGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCACATCACTTGGCATCTGGTGAACCTGCAAGAGGTCAAATCTACGGCTTCAGAGTGGCTCTCTGGTACGAACATCTTGGTCTGTTTGACAAAGCCTTCCATAACCCAGAGACTGAAGACTGCATCCAATTTGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCAGACGATACCTTTGATGGCGATCTTCCAGGCCATCTGCTTTCCTACCCCATCGAAGTAGGCCCCAACGGATCGGTTTCGGCGCTGCCAAAGTTTGAATTTTTCCCTGACACGAAGGCTCGTGTTCTTGGGCAACTGGCCGAGTATCTACCTCCAATCCTTACCACTTGA 2556 42.53 MEEYPSFPVCSTHFQGKAGIFFSFNSVARDKCRACFMGRFTPIYMESTGFKLDALFSAGRTYYEDILNDSTKKFLAGVKRRILCRPEIVGSKMYATVDLDKARVGRTRIVDQPYGPQWNNHFRIYCAHTVSHVIFTIKDGDVIGATLIGRAYVPVEDIIKGFVYEKWVEILDEDGKPLYGRSKIHVKLQFSSVNEDRNWSRGIPDPKFGGVPFTFFNQRWGCKVSLYQDVHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGEDITLGQLLKKKADEGVTVLLLVWDDRTSIEEFKKDGLMATHDQETAEYFKGSKVRCVLCPRNPDVGRSIIQGFETATMFTHHQKTVVLDSEIAGGGTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWRKQVRNNWLIPMQKLEETITRPVMVLPADDPDTWNVQIFRSIDGGAVVGFPDTPEDASKVGLVSGKDNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSNGMRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDANPKDYLTFFCLGNREKKRTGEYVPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKAFHNPETEDCIQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVSALPKFEFFPDTKARVLGQLAEYLPPILTT 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20575171 20579320 + Lsi08G012040.1 Lsi08g01204 669130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01204 851 SMART pld_4 697 724 IPR001736 GO:0003824
Lsi08g01204 851 SMART pld_4 369 407 IPR001736 GO:0003824
Lsi08g01204 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 369 407 IPR001736 GO:0003824
Lsi08g01204 851 Gene3D Endonuclease Chain A 245 493 - -
Lsi08g01204 851 Gene3D Endonuclease Chain A 516 741 - -
Lsi08g01204 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 91 193 IPR035892 -
Lsi08g01204 851 SUPERFAMILY Phospholipase D/nuclease 497 779 - -
Lsi08g01204 851 SMART C2_3c 77 167 IPR000008 -
Lsi08g01204 851 Pfam Phospholipase D Active site motif 369 407 IPR001736 GO:0003824
Lsi08g01204 851 Pfam Phospholipase D Active site motif 698 724 IPR001736 GO:0003824
Lsi08g01204 851 PIRSF PLD_plant 51 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi08g01204 851 PANTHER PHOSPHOLIPASE D ALPHA 3 51 851 - -
Lsi08g01204 851 PANTHER PHOSPHOLIPASE D 51 851 IPR015679 -
Lsi08g01204 851 Gene3D C2 domain 84 201 IPR035892 -
Lsi08g01204 851 CDD C2_plant_PLD 81 190 - -
Lsi08g01204 851 Pfam Phospholipase D C terminal 769 840 IPR024632 -
Lsi08g01204 851 SUPERFAMILY Phospholipase D/nuclease 195 479 - -
Lsi08g01204 851 Pfam C2 domain 91 170 IPR000008 -
Lsi08g01204 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 697 724 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi02g02718 Lsi-Chr2:33509587 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g00563 Lsi-Chr7:5984985 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi08g01204 Lsi-Chr8:20575171 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi07g00464 Lsi-Chr7:4922920 Lsi08g01204 Lsi-Chr8:20575171 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01204 K01115 - csv:101207900 1515.75