Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01206 ATGGCGATGCTTCTGACTGATTTCTGCGTTCTGAAGAAGAGGGAATTTGTCTTTTCCGCCGCGTTGCCATTTCTTCTTAGTTTGCATGAATCCGTGGAAGGTTGTAAAGCTGAGGCGGCAGAAAGGTTGGATAAAAGGGAAGTTGAACGGATAAGAGAAGAAGTAAGAAAGGTGGTAACCAAGGGCAGGGCTCCTGGTCTTCTTCGTCTGGTATTTCACGATGCTGGAACTTTTGAAACAAATGATACTTCAGGTGGTATGAATGGATCTATCATTCACGAACTTGATAGACCTGAAAACAGAGGTCTCAAGAAATCAGTTAAGATTCTTGAGGAAGCAAAGAGTACACTGGATTTAGTTAGACCAGACATGATTGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCAAGTATTGCTGTTGAGTTGGGTAGATTGGACTCGGAGAAGCCAGATCCAGAAGGTAAACTTCCTGAGGAATCTCTGGATGCTGTTGGATTGAAGCAAATCTTCAGCAGAAAAGGATTTGCGACACGGGAACTAGTTGCTCTATCTGGAGCCCATACTATTGGTGGCAAAGGTTTTGGAAGCCCTGTTGTTTTTGACAATGCATATTTCAAAATCCTTTTGGAGAAGCCTTGGTCATCTAACGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGACGATGGTGAATGCTTAAGATGGATCAAAGAGTATGCCAACGATCAGAATGTGTTCTTCGAAGATTTCCAGAATGCTTATACCAAGCTAGTAAATTCTGGTGCAAAGTGGAAAAATAAGGTTACTATGGATAAAGTAGAAATAGGACTAGAATTAGTGGATAAAAGAATGTCTTACCTACGGTGGTTGGGAATAGAACTTGAAGTGAATGCCTTGTTGAGACATGAAATGACCGTCTTTCCGGCATTAAAAGACAAAGCACAAGCAGCCAATGTTGATTTTAAAGAACCTATTCTGTTCGCTTGGATTTGA 1017 42.38 MAMLLTDFCVLKKREFVFSAALPFLLSLHESVEGCKAEAAERLDKREVERIREEVRKVVTKGRAPGLLRLVFHDAGTFETNDTSGGMNGSIIHELDRPENRGLKKSVKILEEAKSTLDLVRPDMIAVAGAEAVSICGGPSIAVELGRLDSEKPDPEGKLPEESLDAVGLKQIFSRKGFATRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSNGGMSSMIGLPSDRALADDGECLRWIKEYANDQNVFFEDFQNAYTKLVNSGAKWKNKVTMDKVEIGLELVDKRMSYLRWLGIELEVNALLRHEMTVFPALKDKAQAANVDFKEPILFAWI 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20597085 20601478 - Lsi08G012060.1 Lsi08g01206 669132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01206 338 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 ProSiteProfiles Plant heme peroxidase family profile. 64 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 13 273 IPR044831 GO:0004601|GO:0034599
Lsi08g01206 338 Gene3D Peroxidase, domain 2 160 262 - -
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 82 92 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 176 197 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 137 149 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 158 175 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 94 118 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 44 64 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PRINTS Plant ascorbate peroxidase signature 246 270 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 13 273 - -
Lsi08g01206 338 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Lsi08g01206 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lsi08g01206 338 Pfam Peroxidase 52 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 SUPERFAMILY Heme-dependent peroxidases 56 275 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi08g01206 338 Gene3D - 52 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01206 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 484.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01206 Lsi-Chr8:20597085 Lsi10g01317 Lsi-Chr10:17378750 9.41E-28 dispersed
Lsi08g01206 Lsi-Chr8:20597085 Lsi11g01196 Lsi-Chr11:20441725 3.08E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01206 Lsi_Chr08 FPKM 23.165699 25.467451 18.592321 19.646461 13.979662 16.693699 14.442183 32.169178 31.122372 31.770449