Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01207 ATGGAAACGAGTGGATTTGGTGGTTATCTGTTGGTCATTATATGGCTGACTCTTCTTCTCCTGAGGTTTAGACCTTGCGCTGCTGGTTTACAGAGCGTTGGGCAGATTTCTCCAGGGCTTCAAGGAACTCAAATGAATTGGGTCGATCACGATGGGGTGTTTCTTCGATCTAATAACTCTGATTTTGGGTTTGGATTCACCAACCCACAGGAAGTAACGCAGTATTTTCTAGCAATTATTCACTTGAGTAGCAGGAGTATCGTCTGGACTGCGAATCAGGCTTCTCCGGTTACGACTTCGGATAAATTCGTGTTCGATGAGAAAGGTAATGTAATTTTATACCATGAAAGCAATGTGGTTTGGTCTACGAACACTGCGAATAAAGGAGTCTCTGCTCTTGCGTTGATGGATTCGGGTAACTTGGTTTTGCTTGGAAGTGATAATGCGGTGATTTGGGAAAGTTTTGGCCATCCGACTGATACCCTTTTGTCGAATCAGGGCTTTGTAGAAGGAATGAGTCTTGTAAGTAAGCCTGATTCGAATAATTTGACTTATTTTCTGGAATTGAAATCTGGGGATATGGTTTTGTATTCAGGATTCAAAACTCCACAACCGTATTGGTCAATGAGCAAAGAGAATCGCAAAACGATTAACAAAGATGGTGGGTCTGTAATCTCTGCAATTCTCACAGCAAACTCGTGGAATTTCCATGGCGAAAACGATGTTTTACTCTGGCAATTTTCCTTCTCACCCAATACTGACGCAAACGCTACATGGATTGCAGTTCTGGGTAACGACGGATTTATCTCCTTTTACGAGCTTCAAAATGGTGGGTCTGGAGATGCTTCGTCCATTCGAATTCCTGAAGATCCTTGTGGAACCCCTGAGCCATGTGGGTCCAATTTTATCTGTTACAGTGAAAAAAAGTGCCTCTGTCCTTCAATTCTTGTCTCGCGTCCAAATTGCCAAACTGGGATTACTTCGCCGTGTGACCAATCTGCTGGACCTGCAGAGCTTGTGGAGTCTCAAGATAAGATTGGTTATTTTGCACTCCAATTCATGCAGCCCTCTTCGAAAACAGATTTGGAGAATTGCAAATCCTCTTGCAGAAGTAACTGCTCTTGTGTTGCTCTGTTTTTCCAAGCGAGTACAGGGGGCTGTTTCTTGTTTGATGAGATAGGTGGGTTTCTAAACTCCAAGAATTCCGAATTCGTTTCGTACATAAAACTCTTGAAAAATGGAGAAAACGGTGAAAACAATGGCGGAAATGGAAGTGGTGGGAAGAAGCCAACCGCTGCGATTCTGGGTATTGCCTTTTCCACTGTGATTGTAATTTGTGGTCTGATTTACGTCGGAATTCGATATGTTAGAAAGAAGAAGGGATCTCCAGAACCTCCTCAAGAGAGTTCAGAAGAAGAGAATTTCTTAGAGGGACTTTCGGGAGCTCCAATTCGTTATAGTTACAAGGATCTTCAAACAGCGACGGATAATTTCTCAGTGAAACTCGGACAAGGTGGGTTCGGTTCAGTTTACAGAGGATTTCTACCAGATGGAACTCGTTTGGCCGTGAAGAAACTAGAAGGAATTGGGCAAGGAAAAAAGGAATTCAGAGCTGAAGTGGGCATAATCGGCAGCATCCATCATATCCACTTGGTCAGATTAAAGGGATTTTGTGCAGAAGGAACCCATCGTCTTCTTGCTTACGAGTTCATGGCCAATGGGTCACTGGACAAATGGATTTTCAAGAAAAACAGAGCAGATTTGTCGCTAGATTGGGATACGAGATTCAACATAGCGTTAGGAACCGCAAAGGGTTTAGCATATCTTCACGAAGACTGTGATGCTAAAATCGTCCACTGTGATATAAAGCCAGAAAATGTACTATTAGACGACAATTTCCAAGCCAAAGTCTCGGATTTCGGGCTAGCAAAGCTAATGAACCGGGAACAGAGCCATGTGTTCACCACACTGCGAGGAACGAGAGGCTATCTCGCTCCAGAATGGATCACAAACTACGCCATTTCAGAGAAGAGCGATGTGTACAGCTACGGAATGGTGCTGCTAGAAATCATTGGCGGAAGAAAGAACTACGACCCAACAGAGAGCTCAGAGAAATCCCATTTCCCAACGTACGCTTTCAAGATGATGGAAGAAGGAAGAATGAAGGCCATTCTCGATGCTAAGTTGAACATAAAAGAAAACGACGAGAGAATCTTGATAGCCATCAAGGTGGCGCTCTGGTGCGTGCAGGAGGATATGCAACAAAGGCCGTCGATGGCCAGAGTGGTGCAAATGCTTGAAGGGGTCAGCGCTGTGCCGCCGCCGCCGACTTGCGCGCCGTTGGGTTCTCGGCTGTTTGCTGCAGGCTTCTTGAAATCGAGCAGCGAGGAATGGACTTCATCGGGGCCATCCGATTGCAATAGCGATGCGTATCTCTCGTCAGAGTTTAGGATCGGACACTGTAAATTTTCAGATTGCTGCAGTTTTGTAAAACGGCTTTTATGTACAGTTTCTCATTTCTCAATAGATTTAAGGAGATTGTTCAACCTTCATTTTATAGTTAGAATGTGA 2571 44.3 METSGFGGYLLVIIWLTLLLLRFRPCAAGLQSVGQISPGLQGTQMNWVDHDGVFLRSNNSDFGFGFTNPQEVTQYFLAIIHLSSRSIVWTANQASPVTTSDKFVFDEKGNVILYHESNVVWSTNTANKGVSALALMDSGNLVLLGSDNAVIWESFGHPTDTLLSNQGFVEGMSLVSKPDSNNLTYFLELKSGDMVLYSGFKTPQPYWSMSKENRKTINKDGGSVISAILTANSWNFHGENDVLLWQFSFSPNTDANATWIAVLGNDGFISFYELQNGGSGDASSIRIPEDPCGTPEPCGSNFICYSEKKCLCPSILVSRPNCQTGITSPCDQSAGPAELVESQDKIGYFALQFMQPSSKTDLENCKSSCRSNCSCVALFFQASTGGCFLFDEIGGFLNSKNSEFVSYIKLLKNGENGENNGGNGSGGKKPTAAILGIAFSTVIVICGLIYVGIRYVRKKKGSPEPPQESSEEENFLEGLSGAPIRYSYKDLQTATDNFSVKLGQGGFGSVYRGFLPDGTRLAVKKLEGIGQGKKEFRAEVGIIGSIHHIHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKKNRADLSLDWDTRFNIALGTAKGLAYLHEDCDAKIVHCDIKPENVLLDDNFQAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTESSEKSHFPTYAFKMMEEGRMKAILDAKLNIKENDERILIAIKVALWCVQEDMQQRPSMARVVQMLEGVSAVPPPPTCAPLGSRLFAAGFLKSSSEEWTSSGPSDCNSDAYLSSEFRIGHCKFSDCCSFVKRLLCTVSHFSIDLRRLFNLHFIVRM 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20602006 20604630 - Lsi08G012070.1 Lsi08g01207 669133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01207 856 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 Pfam D-mannose binding lectin 87 166 IPR001480 -
Lsi08g01207 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Lsi08g01207 856 Gene3D Phosphorylase Kinase; domain 1 464 570 - -
Lsi08g01207 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 814 - -
Lsi08g01207 856 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Lsi08g01207 856 SMART blect_4 46 158 IPR001480 -
Lsi08g01207 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 210 IPR036426 -
Lsi08g01207 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 814 - -
Lsi08g01207 856 SMART serkin_6 496 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 PIRSF SRK 9 816 IPR024171 GO:0004674
Lsi08g01207 856 Gene3D Transferase(Phosphotransferase) domain 1 571 772 - -
Lsi08g01207 856 ProSiteProfiles Bulb-type lectin domain profile. 40 156 IPR001480 -
Lsi08g01207 856 CDD B_lectin 51 158 IPR001480 -
Lsi08g01207 856 SUPERFAMILY Protein kinase-like (PK-like) 480 768 IPR011009 -
Lsi08g01207 856 Gene3D - 45 157 IPR036426 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02129 Lsi08g01207 CCT
Lsi04g02129 Lsi08g01207 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02188 Lsi-Chr4:28942130 Lsi08g01207 Lsi-Chr8:20602006 2.17E-87 dispersed
Lsi08g01207 Lsi-Chr8:20602006 Lsi11g01502 Lsi-Chr11:23485695 2.11E-120 dispersed
Lsi01g02020 Lsi-Chr1:27622917 Lsi08g01207 Lsi-Chr8:20602006 4.01E-152 transposed
Lsi04g02017 Lsi-Chr4:27251629 Lsi08g01207 Lsi-Chr8:20602006 1.92E-23 transposed
Lsi04g02375 Lsi-Chr4:30886200 Lsi08g01207 Lsi-Chr8:20602006 6.00E-149 transposed
Lsi05g01175 Lsi-Chr5:19671667 Lsi08g01207 Lsi-Chr8:20602006 2.25E-142 transposed
Lsi06g00941 Lsi-Chr6:19329829 Lsi08g01207 Lsi-Chr8:20602006 1.41E-103 transposed
Lsi07g00874 Lsi-Chr7:9919608 Lsi08g01207 Lsi-Chr8:20602006 1.15E-28 transposed
Lsi08g00607 Lsi-Chr8:14377769 Lsi08g01207 Lsi-Chr8:20602006 2.12E-129 transposed
Lsi04g02129 Lsi-Chr4:28415176 Lsi08g01207 Lsi-Chr8:20602006 0 wgd
Lsi07g00458 Lsi-Chr7:4879545 Lsi08g01207 Lsi-Chr8:20602006 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83856 PF00069 Pkinase 6.90E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01207 - - csv:101216153 1467.6