Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01207 ATGGAAACGAGTGGATTTGGTGGTTATCTGTTGGTCATTATATGGCTGACTCTTCTTCTCCTGAGGTTTAGACCTTGCGCTGCTGGTTTACAGAGCGTTGGGCAGATTTCTCCAGGGCTTCAAGGAACTCAAATGAATTGGGTCGATCACGATGGGGTGTTTCTTCGATCTAATAACTCTGATTTTGGGTTTGGATTCACCAACCCACAGGAAGTAACGCAGTATTTTCTAGCAATTATTCACTTGAGTAGCAGGAGTATCGTCTGGACTGCGAATCAGGCTTCTCCGGTTACGACTTCGGATAAATTCGTGTTCGATGAGAAAGGTAATGTAATTTTATACCATGAAAGCAATGTGGTTTGGTCTACGAACACTGCGAATAAAGGAGTCTCTGCTCTTGCGTTGATGGATTCGGGTAACTTGGTTTTGCTTGGAAGTGATAATGCGGTGATTTGGGAAAGTTTTGGCCATCCGACTGATACCCTTTTGTCGAATCAGGGCTTTGTAGAAGGAATGAGTCTTGTAAGTAAGCCTGATTCGAATAATTTGACTTATTTTCTGGAATTGAAATCTGGGGATATGGTTTTGTATTCAGGATTCAAAACTCCACAACCGTATTGGTCAATGAGCAAAGAGAATCGCAAAACGATTAACAAAGATGGTGGGTCTGTAATCTCTGCAATTCTCACAGCAAACTCGTGGAATTTCCATGGCGAAAACGATGTTTTACTCTGGCAATTTTCCTTCTCACCCAATACTGACGCAAACGCTACATGGATTGCAGTTCTGGGTAACGACGGATTTATCTCCTTTTACGAGCTTCAAAATGGTGGGTCTGGAGATGCTTCGTCCATTCGAATTCCTGAAGATCCTTGTGGAACCCCTGAGCCATGTGGGTCCAATTTTATCTGTTACAGTGAAAAAAAGTGCCTCTGTCCTTCAATTCTTGTCTCGCGTCCAAATTGCCAAACTGGGATTACTTCGCCGTGTGACCAATCTGCTGGACCTGCAGAGCTTGTGGAGTCTCAAGATAAGATTGGTTATTTTGCACTCCAATTCATGCAGCCCTCTTCGAAAACAGATTTGGAGAATTGCAAATCCTCTTGCAGAAGTAACTGCTCTTGTGTTGCTCTGTTTTTCCAAGCGAGTACAGGGGGCTGTTTCTTGTTTGATGAGATAGGTGGGTTTCTAAACTCCAAGAATTCCGAATTCGTTTCGTACATAAAACTCTTGAAAAATGGAGAAAACGGTGAAAACAATGGCGGAAATGGAAGTGGTGGGAAGAAGCCAACCGCTGCGATTCTGGGTATTGCCTTTTCCACTGTGATTGTAATTTGTGGTCTGATTTACGTCGGAATTCGATATGTTAGAAAGAAGAAGGGATCTCCAGAACCTCCTCAAGAGAGTTCAGAAGAAGAGAATTTCTTAGAGGGACTTTCGGGAGCTCCAATTCGTTATAGTTACAAGGATCTTCAAACAGCGACGGATAATTTCTCAGTGAAACTCGGACAAGGTGGGTTCGGTTCAGTTTACAGAGGATTTCTACCAGATGGAACTCGTTTGGCCGTGAAGAAACTAGAAGGAATTGGGCAAGGAAAAAAGGAATTCAGAGCTGAAGTGGGCATAATCGGCAGCATCCATCATATCCACTTGGTCAGATTAAAGGGATTTTGTGCAGAAGGAACCCATCGTCTTCTTGCTTACGAGTTCATGGCCAATGGGTCACTGGACAAATGGATTTTCAAGAAAAACAGAGCAGATTTGTCGCTAGATTGGGATACGAGATTCAACATAGCGTTAGGAACCGCAAAGGGTTTAGCATATCTTCACGAAGACTGTGATGCTAAAATCGTCCACTGTGATATAAAGCCAGAAAATGTACTATTAGACGACAATTTCCAAGCCAAAGTCTCGGATTTCGGGCTAGCAAAGCTAATGAACCGGGAACAGAGCCATGTGTTCACCACACTGCGAGGAACGAGAGGCTATCTCGCTCCAGAATGGATCACAAACTACGCCATTTCAGAGAAGAGCGATGTGTACAGCTACGGAATGGTGCTGCTAGAAATCATTGGCGGAAGAAAGAACTACGACCCAACAGAGAGCTCAGAGAAATCCCATTTCCCAACGTACGCTTTCAAGATGATGGAAGAAGGAAGAATGAAGGCCATTCTCGATGCTAAGTTGAACATAAAAGAAAACGACGAGAGAATCTTGATAGCCATCAAGGTGGCGCTCTGGTGCGTGCAGGAGGATATGCAACAAAGGCCGTCGATGGCCAGAGTGGTGCAAATGCTTGAAGGGGTCAGCGCTGTGCCGCCGCCGCCGACTTGCGCGCCGTTGGGTTCTCGGCTGTTTGCTGCAGGCTTCTTGAAATCGAGCAGCGAGGAATGGACTTCATCGGGGCCATCCGATTGCAATAGCGATGCGTATCTCTCGTCAGAGTTTAGGATCGGACACTGTAAATTTTCAGATTGCTGCAGTTTTGTAAAACGGCTTTTATGTACAGTTTCTCATTTCTCAATAGATTTAAGGAGATTGTTCAACCTTCATTTTATAGTTAGAATGTGA 2571 44.3 METSGFGGYLLVIIWLTLLLLRFRPCAAGLQSVGQISPGLQGTQMNWVDHDGVFLRSNNSDFGFGFTNPQEVTQYFLAIIHLSSRSIVWTANQASPVTTSDKFVFDEKGNVILYHESNVVWSTNTANKGVSALALMDSGNLVLLGSDNAVIWESFGHPTDTLLSNQGFVEGMSLVSKPDSNNLTYFLELKSGDMVLYSGFKTPQPYWSMSKENRKTINKDGGSVISAILTANSWNFHGENDVLLWQFSFSPNTDANATWIAVLGNDGFISFYELQNGGSGDASSIRIPEDPCGTPEPCGSNFICYSEKKCLCPSILVSRPNCQTGITSPCDQSAGPAELVESQDKIGYFALQFMQPSSKTDLENCKSSCRSNCSCVALFFQASTGGCFLFDEIGGFLNSKNSEFVSYIKLLKNGENGENNGGNGSGGKKPTAAILGIAFSTVIVICGLIYVGIRYVRKKKGSPEPPQESSEEENFLEGLSGAPIRYSYKDLQTATDNFSVKLGQGGFGSVYRGFLPDGTRLAVKKLEGIGQGKKEFRAEVGIIGSIHHIHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKKNRADLSLDWDTRFNIALGTAKGLAYLHEDCDAKIVHCDIKPENVLLDDNFQAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTESSEKSHFPTYAFKMMEEGRMKAILDAKLNIKENDERILIAIKVALWCVQEDMQQRPSMARVVQMLEGVSAVPPPPTCAPLGSRLFAAGFLKSSSEEWTSSGPSDCNSDAYLSSEFRIGHCKFSDCCSFVKRLLCTVSHFSIDLRRLFNLHFIVRM 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20602006 20604630 - Lsi08G012070.1 Lsi08g01207 669133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01207 856 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 Pfam D-mannose binding lectin 87 166 IPR001480 -
Lsi08g01207 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Lsi08g01207 856 Gene3D Phosphorylase Kinase; domain 1 464 570 - -
Lsi08g01207 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 814 - -
Lsi08g01207 856 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Lsi08g01207 856 SMART blect_4 46 158 IPR001480 -
Lsi08g01207 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 210 IPR036426 -
Lsi08g01207 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 814 - -
Lsi08g01207 856 SMART serkin_6 496 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01207 856 PIRSF SRK 9 816 IPR024171 GO:0004674
Lsi08g01207 856 Gene3D Transferase(Phosphotransferase) domain 1 571 772 - -
Lsi08g01207 856 ProSiteProfiles Bulb-type lectin domain profile. 40 156 IPR001480 -
Lsi08g01207 856 CDD B_lectin 51 158 IPR001480 -
Lsi08g01207 856 SUPERFAMILY Protein kinase-like (PK-like) 480 768 IPR011009 -
Lsi08g01207 856 Gene3D - 45 157 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01207 - - - csv:101216153 1467.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02129 Lsi08g01207 CCT
Lsi04g02129 Lsi08g01207 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02188 Lsi-Chr4:28942130 Lsi08g01207 Lsi-Chr8:20602006 2.17E-87 dispersed
Lsi08g01207 Lsi-Chr8:20602006 Lsi11g01502 Lsi-Chr11:23485695 2.11E-120 dispersed
Lsi01g02020 Lsi-Chr1:27622917 Lsi08g01207 Lsi-Chr8:20602006 4.01E-152 transposed
Lsi04g02017 Lsi-Chr4:27251629 Lsi08g01207 Lsi-Chr8:20602006 1.92E-23 transposed
Lsi04g02375 Lsi-Chr4:30886200 Lsi08g01207 Lsi-Chr8:20602006 6.00E-149 transposed
Lsi05g01175 Lsi-Chr5:19671667 Lsi08g01207 Lsi-Chr8:20602006 2.25E-142 transposed
Lsi06g00941 Lsi-Chr6:19329829 Lsi08g01207 Lsi-Chr8:20602006 1.41E-103 transposed
Lsi07g00874 Lsi-Chr7:9919608 Lsi08g01207 Lsi-Chr8:20602006 1.15E-28 transposed
Lsi08g00607 Lsi-Chr8:14377769 Lsi08g01207 Lsi-Chr8:20602006 2.12E-129 transposed
Lsi04g02129 Lsi-Chr4:28415176 Lsi08g01207 Lsi-Chr8:20602006 0 wgd
Lsi07g00458 Lsi-Chr7:4879545 Lsi08g01207 Lsi-Chr8:20602006 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00270 CCT 33 391 Trihelix Transcription Factor Family AT1G12040 64.3 9.6e-41 165.6
Lsi06g00890 CCT 46 220 Trihelix Transcription Factor Family AT1G12040 64.0 2.9e-37 154.1
Lsi04g01602 . 38 291 Trihelix Transcription Factor Family AT1G12040 56.3 2.9e-37 154.1
Lsi05g01631 . 39 364 Trihelix Transcription Factor Family AT1G12040 53.3 2.4e-36 151.0
Lsi11g00270 CCT 15 391 Trihelix Transcription Factor Family AT4G18670 83.1 2.4e-67 254.2
Lsi06g00890 CCT 13 393 Trihelix Transcription Factor Family AT4G18670 80.4 5.8e-66 249.6
Lsi04g01602 . 24 217 Trihelix Transcription Factor Family AT4G18670 71.8 6.5e-41 166.4
Lsi09g01583 . 28 221 Trihelix Transcription Factor Family AT4G18670 59.0 2.5e-40 164.5
Lsi09g01584 . 28 221 Trihelix Transcription Factor Family AT4G18670 59.0 2.5e-40 164.5
Lsi09g01584 . 8 422 Trihelix Transcription Factor Family AT3G19020 61.3 1.3e-58 225.3
Lsi09g01583 . 8 416 Trihelix Transcription Factor Family AT3G19020 61.7 8.3e-58 222.6
Lsi04g01602 . 19 217 Trihelix Transcription Factor Family AT3G19020 78.4 8.0e-53 206.1
Lsi06g00890 CCT 4 220 Trihelix Transcription Factor Family AT3G19020 67.1 8.3e-42 169.5
Lsi11g00270 CCT 10 207 Trihelix Transcription Factor Family AT3G19020 69.0 1.0e-39 162.5
Lsi09g01583 . 64 397 Trihelix Transcription Factor Family AT1G49490 66.1 1.0e-46 185.7
Lsi09g01584 . 64 397 Trihelix Transcription Factor Family AT1G49490 66.1 1.0e-46 185.7
Lsi04g01602 . 5 217 Trihelix Transcription Factor Family AT1G49490 67.6 6.4e-41 166.4
Lsi06g00890 CCT 57 394 Trihelix Transcription Factor Family AT1G49490 74.0 1.1e-40 165.6
Lsi11g00270 CCT 44 376 Trihelix Transcription Factor Family AT1G49490 75.7 1.9e-40 164.9
Lsi09g01584 . 27 420 Trihelix Transcription Factor Family AT2G15880 62.7 3.8e-66 250.0
Lsi09g01583 . 27 397 Trihelix Transcription Factor Family AT2G15880 67.0 6.4e-66 249.2
Lsi04g01602 . 24 219 Trihelix Transcription Factor Family AT2G15880 78.6 3.1e-52 203.8
Lsi11g00270 CCT 15 391 Trihelix Transcription Factor Family AT2G15880 66.8 7.2e-41 166.0
Lsi06g00890 CCT 27 398 Trihelix Transcription Factor Family AT2G15880 67.0 2.1e-40 164.5
Lsi09g01583 . 13 409 Trihelix Transcription Factor Family AT4G33970 62.8 9.6e-59 225.3
Lsi09g01584 . 13 409 Trihelix Transcription Factor Family AT4G33970 62.8 9.6e-59 225.3
Lsi04g01602 . 3 219 Trihelix Transcription Factor Family AT4G33970 70.5 5.8e-48 189.5
Lsi08g01612 . 1 198 Trihelix Transcription Factor Family AT1G13450 66.1 4.1e-67 251.5
Lsi03g02220 CCT 57 309 Trihelix Transcription Factor Family AT5G01380 58.1 1.4e-49 193.7
Lsi11g00270 CCT 15 391 Trihelix Transcription Factor Family AT4G18670 83.1 2.4e-67 254.2
Lsi06g00890 CCT 13 393 Trihelix Transcription Factor Family AT4G18670 80.4 5.8e-66 249.6
Lsi04g01602 . 24 217 Trihelix Transcription Factor Family AT4G18670 71.8 6.5e-41 166.4
Lsi09g01583 . 28 221 Trihelix Transcription Factor Family AT4G18670 59.0 2.5e-40 164.5
Lsi09g01584 . 28 221 Trihelix Transcription Factor Family AT4G18670 59.0 2.5e-40 164.5
Lsi09g01583 . 13 409 Trihelix Transcription Factor Family AT4G33970 62.8 9.6e-59 225.3
Lsi09g01584 . 13 409 Trihelix Transcription Factor Family AT4G33970 62.8 9.6e-59 225.3
Lsi04g01602 . 3 219 Trihelix Transcription Factor Family AT4G33970 70.5 5.8e-48 189.5
Lsi08g00290 . 59 597 Trihelix Transcription Factor Family AT1G76880 52.9 1.1e-106 384.4
Lsi08g00289 . 49 473 Trihelix Transcription Factor Family AT1G76880 60.2 5.9e-89 325.5
Lsi03g01930 . 101 367 Trihelix Transcription Factor Family AT3G10000 53.0 2.1e-62 236.9
Lsi09g01584 . 8 422 Trihelix Transcription Factor Family AT3G19020 61.3 1.3e-58 225.3
Lsi09g01583 . 8 416 Trihelix Transcription Factor Family AT3G19020 61.7 8.3e-58 222.6
Lsi04g01602 . 19 217 Trihelix Transcription Factor Family AT3G19020 78.4 8.0e-53 206.1
Lsi06g00890 CCT 4 220 Trihelix Transcription Factor Family AT3G19020 67.1 8.3e-42 169.5
Lsi11g00270 CCT 10 207 Trihelix Transcription Factor Family AT3G19020 69.0 1.0e-39 162.5
Lsi09g01583 . 64 397 Trihelix Transcription Factor Family AT1G49490 66.1 1.0e-46 185.7
Lsi09g01584 . 64 397 Trihelix Transcription Factor Family AT1G49490 66.1 1.0e-46 185.7
Lsi04g01602 . 5 217 Trihelix Transcription Factor Family AT1G49490 67.6 6.4e-41 166.4
Lsi06g00890 CCT 57 394 Trihelix Transcription Factor Family AT1G49490 74.0 1.1e-40 165.6
Lsi11g00270 CCT 44 376 Trihelix Transcription Factor Family AT1G49490 75.7 1.9e-40 164.9
Lsi03g00221 . 300 680 Trihelix Transcription Factor Family AT1G68690 65.7 6.1e-140 495.0
Lsi04g00311 . 1083 1467 Trihelix Transcription Factor Family AT1G68690 63.2 4.6e-135 478.8
Lsi04g00550 . 324 663 Trihelix Transcription Factor Family AT1G68690 64.4 2.2e-121 433.3
Lsi11g00260 . 282 570 Trihelix Transcription Factor Family AT1G68690 64.4 3.2e-112 402.9
Lsi06g00871 . 230 518 Trihelix Transcription Factor Family AT1G68690 64.7 1.2e-111 401.0
Lsi03g01118 . 362 650 Trihelix Transcription Factor Family AT1G68690 55.5 1.6e-84 310.8
Lsi05g01067 . 359 639 Trihelix Transcription Factor Family AT1G68690 56.7 4.8e-84 309.3
Lsi07g00562 . 483 783 Trihelix Transcription Factor Family AT1G68690 51.1 1.5e-82 304.3
Lsi02g02938 . 532 813 Trihelix Transcription Factor Family AT1G68690 54.7 1.2e-79 294.7
Lsi03g02064 . 46 350 Trihelix Transcription Factor Family AT1G68690 51.8 1.5e-77 287.7
Lsi05g01512 . 74 358 Trihelix Transcription Factor Family AT1G68690 51.4 3.3e-77 286.6
Lsi09g01752 . 73 357 Trihelix Transcription Factor Family AT1G68690 50.3 5.7e-77 285.8
Lsi07g00440 . 27 307 Trihelix Transcription Factor Family AT1G68690 50.9 5.7e-77 285.8
Lsi04g01809 CCT,ECH 45 326 Trihelix Transcription Factor Family AT1G68690 50.5 2.4e-75 280.4
Lsi03g00221 . 271 626 Trihelix Transcription Factor Family AT1G26150 61.6 1.9e-117 420.2
Lsi04g00311 . 1103 1413 Trihelix Transcription Factor Family AT1G26150 67.7 3.0e-115 412.9
Lsi04g00550 . 367 609 Trihelix Transcription Factor Family AT1G26150 70.8 2.6e-98 356.7
Lsi11g00260 . 282 516 Trihelix Transcription Factor Family AT1G26150 68.5 2.4e-96 350.1
Lsi06g00871 . 227 464 Trihelix Transcription Factor Family AT1G26150 67.5 4.1e-96 349.4
Lsi06g00279 . 648 885 Trihelix Transcription Factor Family AT1G26150 59.2 9.5e-77 285.0
Lsi03g02064 . 31 290 Trihelix Transcription Factor Family AT1G26150 54.6 6.8e-75 278.9
Lsi03g01118 . 363 599 Trihelix Transcription Factor Family AT1G26150 60.1 1.2e-74 278.1
Lsi02g02938 . 506 762 Trihelix Transcription Factor Family AT1G26150 53.7 2.4e-72 270.4
Lsi11g01100 . 126 370 Trihelix Transcription Factor Family AT1G26150 53.2 7.0e-72 268.9
Lsi07g00562 . 476 733 Trihelix Transcription Factor Family AT1G26150 51.2 2.7e-71 266.9
Lsi08g01486 . 504 733 Trihelix Transcription Factor Family AT1G26150 53.0 1.3e-70 264.6
Lsi09g01752 . 69 304 Trihelix Transcription Factor Family AT1G26150 54.7 5.0e-70 262.7
Lsi11g00025 . 714 948 Trihelix Transcription Factor Family AT1G26150 52.8 6.6e-70 262.3
Lsi10g01538 . 175 404 Trihelix Transcription Factor Family AT1G26150 55.6 8.6e-70 261.9
Lsi05g01512 . 72 305 Trihelix Transcription Factor Family AT1G26150 55.6 7.3e-69 258.8
Lsi02g01412 . 79 320 Trihelix Transcription Factor Family AT1G26150 53.5 9.5e-69 258.5
Lsi06g01108 CCT 18 256 Trihelix Transcription Factor Family AT1G26150 50.6 9.5e-69 258.5
Lsi01g00968 . 547 776 Trihelix Transcription Factor Family AT1G26150 50.9 1.6e-68 257.7
Lsi11g01627 . 181 410 Trihelix Transcription Factor Family AT1G26150 54.7 2.1e-68 257.3
Lsi04g01809 CCT,ECH 45 274 Trihelix Transcription Factor Family AT1G26150 55.2 2.1e-68 257.3
Lsi04g00826 . 32 276 Trihelix Transcription Factor Family AT1G26150 53.5 2.8e-68 256.9
Lsi02g00755 . 74 309 Trihelix Transcription Factor Family AT1G26150 52.1 1.8e-67 254.2
Lsi07g00440 . 15 257 Trihelix Transcription Factor Family AT1G26150 50.6 4.0e-67 253.1
Lsi06g00150 . 129 361 Trihelix Transcription Factor Family AT1G26150 50.6 6.4e-65 245.7
Lsi03g01282 . 57 288 Trihelix Transcription Factor Family AT1G26150 50.9 7.0e-64 242.3
Lsi04g00318 CCT,ECH 257 485 Trihelix Transcription Factor Family AT1G26150 50.2 1.6e-63 241.1
Lsi01g01353 . 30 267 Trihelix Transcription Factor Family AT1G26150 50.8 2.0e-63 240.7
Lsi05g01245 . 1018 1247 Trihelix Transcription Factor Family AT1G26150 50.9 5.9e-63 239.2
Lsi03g00789 . 63 295 Trihelix Transcription Factor Family AT1G26150 50.6 5.0e-62 236.1
Lsi01g01104 . 876 1104 Trihelix Transcription Factor Family AT1G26150 50.9 8.6e-62 235.3
Lsi05g00137 . 763 991 Trihelix Transcription Factor Family AT1G26150 51.1 1.9e-61 234.2
Lsi01g00393 . 262 492 Trihelix Transcription Factor Family AT1G26150 50.2 1.9e-61 234.2
Lsi03g00939 . 315 547 Trihelix Transcription Factor Family AT1G26150 50.2 2.5e-61 233.8
Lsi02g02522 . 70 303 Trihelix Transcription Factor Family AT1G26150 50.2 4.3e-61 233.0
Lsi04g00550 . 280 559 Trihelix Transcription Factor Family AT1G23540 62.5 3.3e-91 332.8
Lsi06g00871 . 208 414 Trihelix Transcription Factor Family AT1G23540 67.1 2.3e-76 283.5
Lsi03g00221 . 399 576 Trihelix Transcription Factor Family AT1G23540 73.0 1.2e-74 277.7
Lsi11g00260 . 282 466 Trihelix Transcription Factor Family AT1G23540 69.2 1.8e-73 273.9
Lsi04g00311 . 1177 1363 Trihelix Transcription Factor Family AT1G23540 66.8 3.2e-70 263.1
Lsi11g01627 . 168 360 Trihelix Transcription Factor Family AT1G23540 52.6 6.0e-53 205.7
Lsi10g01538 . 147 354 Trihelix Transcription Factor Family AT1G23540 50.7 2.3e-52 203.8
Lsi11g01100 . 142 321 Trihelix Transcription Factor Family AT1G23540 54.4 5.1e-52 202.6
Lsi01g00968 . 536 726 Trihelix Transcription Factor Family AT1G23540 51.0 2.5e-51 200.3
Lsi08g01486 . 493 683 Trihelix Transcription Factor Family AT1G23540 50.5 4.3e-51 199.5
Lsi06g00279 . 642 835 Trihelix Transcription Factor Family AT1G23540 51.8 7.4e-51 198.7
Lsi06g01088 . 375 552 Trihelix Transcription Factor Family AT1G23540 55.0 6.2e-50 195.7
Lsi10g00357 . 261 398 Trihelix Transcription Factor Family AT1G23540 66.7 6.2e-50 195.7
Lsi04g00318 CCT,ECH 258 434 Trihelix Transcription Factor Family AT1G23540 54.7 2.4e-49 193.7
Lsi02g02938 . 531 712 Trihelix Transcription Factor Family AT1G23540 52.7 3.1e-49 193.4
Lsi04g01809 CCT,ECH 45 225 Trihelix Transcription Factor Family AT1G23540 53.6 4.0e-49 193.0
Lsi05g01067 . 359 538 Trihelix Transcription Factor Family AT1G23540 53.9 4.0e-49 193.0
Lsi09g00786 CCT,ECH 291 467 Trihelix Transcription Factor Family AT1G23540 53.6 6.9e-49 192.2
Lsi06g00265 . 376 561 Trihelix Transcription Factor Family AT1G23540 50.5 6.9e-49 192.2
Lsi07g00440 . 28 207 Trihelix Transcription Factor Family AT1G23540 52.8 1.2e-48 191.4
Lsi03g00201 . 292 486 Trihelix Transcription Factor Family AT1G23540 52.3 2.0e-48 190.7
Lsi08g01665 . 286 466 Trihelix Transcription Factor Family AT1G23540 51.4 3.8e-47 186.4
Lsi03g01118 . 362 549 Trihelix Transcription Factor Family AT1G23540 53.7 3.8e-47 186.4
Lsi11g00025 . 719 897 Trihelix Transcription Factor Family AT1G23540 51.4 4.9e-47 186.0
Lsi03g00939 . 315 495 Trihelix Transcription Factor Family AT1G23540 53.6 6.5e-47 185.7
Lsi05g01245 . 1018 1193 Trihelix Transcription Factor Family AT1G23540 51.7 8.4e-47 185.3
Lsi03g02297 . 921 1085 Trihelix Transcription Factor Family AT1G23540 52.7 1.9e-46 184.1
Lsi05g00137 . 763 938 Trihelix Transcription Factor Family AT1G23540 52.8 3.2e-46 183.3
Lsi03g01956 . 1958 2135 Trihelix Transcription Factor Family AT1G23540 51.1 3.2e-46 183.3
Lsi02g02638 . 802 977 Trihelix Transcription Factor Family AT1G23540 50.6 3.2e-46 183.3
Lsi01g01104 . 876 1055 Trihelix Transcription Factor Family AT1G23540 51.7 3.2e-46 183.3
Lsi08g01207 CCT,ECH 479 662 Trihelix Transcription Factor Family AT1G23540 50.3 1.6e-45 181.0
Lsi03g00789 . 63 243 Trihelix Transcription Factor Family AT1G23540 51.9 1.6e-45 181.0
Lsi04g00839 . 469 642 Trihelix Transcription Factor Family AT1G23540 51.1 1.0e-44 178.3
Lsi08g01612 . 1 381 Trihelix Transcription Factor Family AT3G25990 65.1 2.2e-139 492.3
Lsi11g00270 CCT 33 391 Trihelix Transcription Factor Family AT1G12040 64.3 9.6e-41 165.6
Lsi06g00890 CCT 46 220 Trihelix Transcription Factor Family AT1G12040 64.0 2.9e-37 154.1
Lsi04g01602 . 38 291 Trihelix Transcription Factor Family AT1G12040 56.3 2.9e-37 154.1
Lsi05g01631 . 39 364 Trihelix Transcription Factor Family AT1G12040 53.3 2.4e-36 151.0
Lsi03g02220 CCT 54 312 Trihelix Transcription Factor Family AT2G38250 63.7 5.0e-54 208.4
Lsi03g00221 . 293 759 Trihelix Transcription Factor Family AT5G38560 68.4 6.1e-175 611.3
Lsi04g00311 . 1072 1525 Trihelix Transcription Factor Family AT5G38560 59.5 5.9e-146 515.0
Lsi04g00550 . 270 731 Trihelix Transcription Factor Family AT5G38560 55.3 2.5e-136 483.0
Lsi11g00260 . 252 625 Trihelix Transcription Factor Family AT5G38560 58.2 1.7e-121 433.7
Lsi06g00871 . 214 584 Trihelix Transcription Factor Family AT5G38560 58.2 1.5e-120 430.6
Lsi03g01118 . 366 681 Trihelix Transcription Factor Family AT5G38560 52.2 2.0e-85 313.9
Lsi06g00279 . 655 940 Trihelix Transcription Factor Family AT5G38560 54.0 8.7e-81 298.5
Lsi07g00562 . 482 788 Trihelix Transcription Factor Family AT5G38560 50.2 1.1e-80 298.1
Lsi02g02938 . 532 828 Trihelix Transcription Factor Family AT5G38560 51.2 3.6e-79 293.1
Lsi05g01067 . 359 653 Trihelix Transcription Factor Family AT5G38560 51.7 1.4e-78 291.2
Lsi11g01627 . 180 465 Trihelix Transcription Factor Family AT5G38560 50.2 1.6e-74 277.7
Lsi11g00260 . 289 650 Trihelix Transcription Factor Family AT4G32710 63.8 6.8e-124 441.8
Lsi06g00871 . 218 596 Trihelix Transcription Factor Family AT4G32710 60.7 1.0e-119 427.9
Lsi04g00550 . 331 729 Trihelix Transcription Factor Family AT4G32710 53.3 8.4e-106 381.7
Lsi03g00221 . 399 697 Trihelix Transcription Factor Family AT4G32710 62.3 2.7e-104 376.7
Lsi04g00311 . 1183 1472 Trihelix Transcription Factor Family AT4G32710 62.5 4.0e-100 362.8
Lsi04g01809 CCT,ECH 45 331 Trihelix Transcription Factor Family AT4G32710 50.7 7.9e-72 268.9
Lsi04g00550 . 269 723 Trihelix Transcription Factor Family AT1G70460 65.7 2.0e-160 563.1
Lsi03g00221 . 307 726 Trihelix Transcription Factor Family AT1G70460 59.6 1.4e-137 487.3
Lsi11g00260 . 281 633 Trihelix Transcription Factor Family AT1G70460 64.3 7.6e-128 454.9
Lsi04g00311 . 1177 1522 Trihelix Transcription Factor Family AT1G70460 64.9 1.7e-127 453.8
Lsi06g00871 . 224 567 Trihelix Transcription Factor Family AT1G70460 65.4 4.9e-127 452.2
Lsi03g01118 . 362 654 Trihelix Transcription Factor Family AT1G70460 53.7 1.3e-79 294.7
Lsi06g00265 . 375 657 Trihelix Transcription Factor Family AT1G70460 50.5 2.2e-79 293.9
Lsi06g00279 . 650 940 Trihelix Transcription Factor Family AT1G70460 51.2 2.5e-78 290.4
Lsi10g01538 . 164 461 Trihelix Transcription Factor Family AT1G70460 50.2 4.2e-78 289.7
Lsi07g00440 . 28 314 Trihelix Transcription Factor Family AT1G70460 50.2 7.9e-77 285.4
Lsi02g02938 . 531 817 Trihelix Transcription Factor Family AT1G70460 50.7 6.7e-76 282.3
Lsi05g01067 . 359 643 Trihelix Transcription Factor Family AT1G70460 51.7 6.7e-76 282.3
Lsi04g01809 CCT,ECH 45 331 Trihelix Transcription Factor Family AT1G70460 50.7 4.4e-75 279.6
Lsi09g01584 . 27 420 Trihelix Transcription Factor Family AT2G15880 62.7 3.8e-66 250.0
Lsi09g01583 . 27 397 Trihelix Transcription Factor Family AT2G15880 67.0 6.4e-66 249.2
Lsi04g01602 . 24 219 Trihelix Transcription Factor Family AT2G15880 78.6 3.1e-52 203.8
Lsi11g00270 CCT 15 391 Trihelix Transcription Factor Family AT2G15880 66.8 7.2e-41 166.0
Lsi06g00890 CCT 27 398 Trihelix Transcription Factor Family AT2G15880 67.0 2.1e-40 164.5
Lsi03g01930 . 101 367 Trihelix Transcription Factor Family AT5G03680 58.2 5.6e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83856 PF00069 Pkinase 6.90E-50 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01207 Lsi_Chr08 FPKM 29.256546 32.325378 35.127701 35.348064 57.000381 55.68026 58.992085 62.95216 57.940178 59.743061