Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01210 ATGCTTCTTTGCTTACCTTTAGCCATTCTCTTTACCATCAATATCCCCACCACCCTTCATTCCATCAGCTCCTCCGATTACCCTTTTATTTTCCCCTTTCAATCTCTCTACGCCTCCAACATCCACCGCATAATCATCCCTTCTCCGCCGCCGCCGCCGCCTCCGGAGGATGACGATTTGCTCTTCCCACTAGCCGCCCGTGTCAATTCGACCCCATCGCCGACTCGGAAACTGGCCTTCTTGTTTCTCACTAATTCCCCTCTCCCTTTTGCTCCACTTTGGGAATTGTTCTTCGAAAACATCTCACCGGATCTTTTCAATATCTACATCCACGCCGACCCGACCCGAGAGTATGACCCGCCTTTCTCCGGCGTATTCGCCCACCGGATCATCCCCTCTAAACCCACTAAGAGATTCTCCCCTACTCTTTCCGCTGCCGCCCGTCGCCTTCTCGCTCATGCGCTACTTCACGATTCTGCTAATTCCATGTTTGCCCTTCTCTCCCCTTCTTGTATCCCTCTCCACTCCTTCAATTTCACCTTCAGAACGCTGATTCGCTCCAAGAAAAGCTTCATCGAGGTTCTCAAAAGTGAGATCGGTGCCTATGACAGGTGGGCTGCGCGTGGCCAGGACGTGATGCTTCCGGTGGTTAAATTGGCGGATTTTCGTATTGGGTCGCAGTTTTGGGTGCTGAAGCGGCGGCACGCGCGGATAGTGGTGAGAGATAAGAGACTTTGGTCGAAGTTTGACTTGCCTTGCGTGCGGAGGGACACGTGTTACCCCGAGGAGAATTATTTCCCGACGTTACTCAGCATGTGGGACCGCAGAGGACTTGTGCCAGCTACACTTACACACGTGGATTGGAACGGGAGTTTCGATGGCCACCCTCGCACCTACGTGGCATCTGAGGTGGGACCGGATCTCATACGTGGTTTGAGAATGGCCCGGCCGAGATACGGCGACGGTGGATGGAGAATGAAAATTAGAATGAGAAACCGAAGGGGCGGCGGCCGGAATGTGTCCGCTGCTAAATCTCAGCGTCAAGACCCGTTCTTGTTTGCGAGAAAATTCTCTGCAGACTCGCTCCAGCGGCTGATGAACATATCGAGTGACTTCATATTTCAAGATTGA 1131 52.79 MLLCLPLAILFTINIPTTLHSISSSDYPFIFPFQSLYASNIHRIIIPSPPPPPPPEDDDLLFPLAARVNSTPSPTRKLAFLFLTNSPLPFAPLWELFFENISPDLFNIYIHADPTREYDPPFSGVFAHRIIPSKPTKRFSPTLSAAARRLLAHALLHDSANSMFALLSPSCIPLHSFNFTFRTLIRSKKSFIEVLKSEIGAYDRWAARGQDVMLPVVKLADFRIGSQFWVLKRRHARIVVRDKRLWSKFDLPCVRRDTCYPEENYFPTLLSMWDRRGLVPATLTHVDWNGSFDGHPRTYVASEVGPDLIRGLRMARPRYGDGGWRMKIRMRNRRGGGRNVSAAKSQRQDPFLFARKFSADSLQRLMNISSDFIFQD 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20623808 20624938 + Lsi08G012100.1 Lsi08g01210 669136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01210 376 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 1 376 IPR044174 GO:0016757
Lsi08g01210 376 Pfam Core-2/I-Branching enzyme 78 312 IPR003406 GO:0016020|GO:0016757
Lsi08g01210 376 PANTHER CORE-2/I-BRANCHING ENZYME 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01210 - - - csv:101207162 615.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00543 Lsi-Chr7:5722779 Lsi08g01210 Lsi-Chr8:20623808 1.28E-77 dispersed
Lsi08g01210 Lsi-Chr8:20623808 Lsi11g00784 Lsi-Chr11:9086284 1.10E-41 dispersed
Lsi08g01210 Lsi-Chr8:20623808 Lsi07g00551 Lsi-Chr7:5846349 6.87E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g488 . . Bda01g00748 . . Bpe02g00560 . . Cmo05g00380 Cmo12g00291 . Cma05g00379 . Car12g00323 Sed03g1616 Cpe07g00300 . Bhi04g00944 Tan02g2729 Cmetu03g0580 . Hepe10g0245 . Lcy13g1795 . . . . . . . Cone4ag1782 Cone7ag1697 . Cone20ag0673 . . . Cme03g01610 . . . . . . . . . . . . Cma12g00342 . Car05g00322 Cpe11g00324 . . . . . . . . Cla08g01339 Cam08g1801 Cec08g1380 Cco08g1508 Clacu08g1495 . Cre08g1282 Lsi08g01210 . Chy03g01115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008502 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01210 Lsi_Chr08 FPKM 3.291089 3.285129 0.0 0.0 1.361984 2.531203 0.0 3.499235 2.033163 2.180518