Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01229 ATGGCTTTTCGCAACCAGCTCTCTCGGGACCTTCCTCTCCATTACACAAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAATACTTTGCGCTCGATTCTATCTGATCAGCTCACCGACCACTCTCCGGCTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCGCTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACGCTGGTGACACCACGACGACCGCTGCGGATAACGTCAACACCGACTTTCTTAATCTTCACACGACTGCTCCAAATTCTGCCGTTTCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCTATGATTGGCGCTACTGCCACCTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGCGGGGGAGGGGAGGGGGTTAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCATGTCGCCTGCCTCCGGATCGCAACGCCGGTGGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTTGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTATTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCTGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGAGGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGGGAGGAGATTTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCGTATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGCCTTCAACTGAAGCAGATAAATAACTGGTTTATTAACCAGAGAAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGGTATAGCTACTGA 1260 49.44 MAFRNQLSRDLPLHYTNQPQQQQPERPLSDNTLRSILSDQLTDHSPAGDGSKSEHPLQSAPNWLNSALLRNQTPHSHYAGDTTTTAADNVNTDFLNLHTTAPNSAVSHPSGQWLSRPILHRNQSDVIDDVADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNEGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDANLFDGSLEGHDAMGEEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRYSY 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20736876 20742092 - Lsi08G012290.1 Lsi08g01229 669155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01229 419 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Lsi08g01229 419 SMART KNOX2_2 244 299 IPR005541 GO:0003677|GO:0005634
Lsi08g01229 419 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Lsi08g01229 419 MobiDBLite consensus disorder prediction 40 59 - -
Lsi08g01229 419 CDD homeodomain 342 403 IPR001356 GO:0003677
Lsi08g01229 419 Pfam KNOX2 domain 248 298 IPR005541 GO:0003677|GO:0005634
Lsi08g01229 419 SMART KNOX1_2 188 232 IPR005540 GO:0003677|GO:0005634
Lsi08g01229 419 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 337 417 - -
Lsi08g01229 419 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 336 - -
Lsi08g01229 419 SMART HOX_1 341 406 IPR001356 GO:0003677
Lsi08g01229 419 MobiDBLite consensus disorder prediction 399 419 - -
Lsi08g01229 419 MobiDBLite consensus disorder prediction 144 159 - -
Lsi08g01229 419 SUPERFAMILY Homeodomain-like 341 405 IPR009057 -
Lsi08g01229 419 Pfam KNOX1 domain 191 230 IPR005540 GO:0003677|GO:0005634
Lsi08g01229 419 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 337 417 - -
Lsi08g01229 419 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 336 - -
Lsi08g01229 419 Gene3D - 338 412 - -
Lsi08g01229 419 MobiDBLite consensus disorder prediction 144 179 - -
Lsi08g01229 419 MobiDBLite consensus disorder prediction 10 29 - -
Lsi08g01229 419 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01229 Lsi-Chr8:20736876 Lsi11g01422 Lsi-Chr11:22788484 9.91E-30 dispersed
Lsi09g00319 Lsi-Chr9:3295926 Lsi08g01229 Lsi-Chr8:20736876 3.59E-44 transposed
Lsi04g02098 Lsi-Chr4:28156679 Lsi08g01229 Lsi-Chr8:20736876 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25799 PF03791 KNOX2 1.70E-19 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01229 - - csv:101213817 717.227