Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01234 ATGCCTAGACCACAACAGAGATTTCGCGGTGTCCGACAACGCCATTGGGGCTCCTGGGTCTCGGAAATCCGTCATCCTTTATTGAAAACTAGAATCTGGCTTGGCACTTTCGAGACGGCGGAAGATGCAGCACGAGCATATGACGAAGCCGCACGCCTTATGTGTGGACCGAGAGCACGTACAAACTTCCCTTATGATGCTTCTCTGTCTCGCTCCTCGTCTTCTCGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCCGCACGTCGCCCTCAAACTGACTTTTCCATGGCGTCCGGCATTGCTCCGGTCGAGCGAGTGGAAGCGGATACGACCACGGTGAAGAAAGTCAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAGATGTTGGATGATGATCATATACAACAAATGATTGAGGAGCTGCTTGATTATGGCGGAATTGAGCTTCGTTCTGCTTCTGTTGGCATTGACTGTTAA 537 51.4 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDFSMASGIAPVERVEADTTTVKKVKLESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVGIDC 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20802008 20802626 + Lsi08G012340.1 Lsi08g01234 669160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01234 178 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lsi08g01234 178 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lsi08g01234 178 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lsi08g01234 178 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lsi08g01234 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 172 - -
Lsi08g01234 178 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lsi08g01234 178 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Lsi08g01234 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 172 - -
Lsi08g01234 178 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lsi08g01234 178 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00969 Lsi-Chr6:19664746 Lsi08g01234 Lsi-Chr8:20802008 5.51E-31 dispersed
Lsi07g00438 Lsi-Chr7:4672409 Lsi08g01234 Lsi-Chr8:20802008 6.42E-49 dispersed
Lsi07g00465 Lsi-Chr7:4943990 Lsi08g01234 Lsi-Chr8:20802008 6.40E-25 dispersed
Lsi08g01234 Lsi-Chr8:20802008 Lsi11g00320 Lsi-Chr11:3283759 7.56E-34 dispersed
Lsi08g01234 Lsi-Chr8:20802008 Lsi08g01235 Lsi-Chr8:20809012 1.13E-29 tandem
Lsi02g02675 Lsi-Chr2:33219838 Lsi08g01234 Lsi-Chr8:20802008 2.93E-56 wgd
Lsi04g02091 Lsi-Chr4:28094084 Lsi08g01234 Lsi-Chr8:20802008 4.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25800 PF00847 AP2 1.90E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01234 - - csv:101212705 296.975