Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01248 ATGTCGGACGAAGAGCATCATTTTGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGCTACATTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATCTTCACCTCCAAAAAACTTGAAGATATTGTTCCATCATCTCACAACTGTGATGTTCCTGAGGTTACTCGTACCGATTATCAGCTCATTGACATATCTGAAGATGGATTTGTGAGCCTTTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTTCTACTGATGAAAGTTTACTTGCTCAGGTTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA 483 45.13 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLSTDESLLAQVKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20955079 20956975 + Lsi08G012480.1 Lsi08g01248 669174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01248 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Lsi08g01248 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Lsi08g01248 160 Gene3D - 86 159 IPR012340 -
Lsi08g01248 160 CDD S1_eIF5A 86 156 - -
Lsi08g01248 160 Gene3D - 1 85 IPR014722 -
Lsi08g01248 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi08g01248 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi08g01248 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi08g01248 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi08g01248 160 MobiDBLite consensus disorder prediction 1 21 - -
Lsi08g01248 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lsi08g01248 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi08g01248 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01336 Lsi08g01248 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01156 Lsi-Chr6:21755679 Lsi08g01248 Lsi-Chr8:20955079 9.43E-100 dispersed
Lsi10g00857 Lsi-Chr10:12662915 Lsi08g01248 Lsi-Chr8:20955079 7.94E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01248 K03263 K02180 csv:101211156 317.39