Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01250 ATGAAGTTCATGAAGTTGGGATCAAAACCAGACGCCTTTCGAGCCGATGGAAAAACTACTCGGTATGTTTCATCTGAATTGCCAACGGACGTTACTATTTTTGTGGGTGAAGTAAAGTTTCTTGTTCATAAGTTTCCTCTGTTGTCCAAGAGCAATTGCTTGCAGAAACTAGTATCAAAAGCCAATGAGGAGAATTCTGAAGAAATTCATCTGGTGGATTTTCCTGGTGGACCTAAGGCATTTGAAATCTGTGCAAAGTTCTGCTATGGAATCACTGTTACTCTTAATGCCTATAATGTAGTGGCTGCTCGTTGTGCAGCTGAATTCCTCGAAATGACAGAGGACATTGAAAGAGGAAATCTTGTATTTAAGATTGAGGTCTTCCTAAACTCTAGCATCTTCCGTAGTTGGAAAGACTCCATCATTGTTCTCCAAACAGCCAAATCTCTTCTTCCTTGGTCTGAGGATCTGAAGATTGTTGGGAGATGTATTGATTCAATTGCCTCAAAGACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAACTATCAGAGGTGGATAGAATTGTAGAAGATGGAATCAAGTACCAAAAGAAAATTGACTCTGTACCAAACGATTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTGTATAGGCGTGTTATGATTGCTGTGAAATCAAAGGGCAGAATGGATGGTTCAGTAATTGGGGAGGCACTTAAAACTTATGCTGTTAGATGGTTACCAGACACTGTAAATGCTTTGGCCTCTGACGCCCATATTAAGCGGAACAGGTCTCTCATTGAAACAATCATTTGCTTATTGCCATCTGACAGAAACATAGGTTGCTCATGCAGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTTGGAGCTGATGATGCATTGAGGGAGGATTTGGTGAAGAGAATTGGCTTGAAGCTGCATGAGGCTTCAGTCAAAGATTTATTGATTCTTGCACAATCTCCCCAAGTTACAAGATATGATGTTGAATTGGTTTATAGGATCGTGAATCAGTATTTTGTTCATCAAAAGTTCAACCGAAATACCGACGTTATCGAGAGAAGCGAGAAAGGGGCTGAAAATCTTTTACTGGGGCATGGGTCCTCATTGAATGTAGCTAAACTGATTGACGAGTATCTTGCTGAAATTGCAGATGACCCTAATCTCTCACTCGCTAGTTTCATTGACTTGTCACAGTCGATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCAATTGACATTTATCTTAAGGTTCACCCAAGTTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCATCGATGCATGCAGCACAAAATGAACAGCTCCCGCTTAGAGTTGTAGTTCAAGTTCTCTTCTTTGAACAGGTTAGAGCCTCAGTTAGCGTCGAAGCGCAAAACAACTCTCGAGACTCTTCAAGTGTAATGACAAGCATTGATGAAGAATGCCCGAAGGTGTTGGACAGCTGCAAGTCCCTCAAACACAATATGGGGCACATGAAGATAAGTGAAGACGTTCAGAAAACAAAGAAGTTAGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGTATGCAGCTGTTGCCATCAAGGTCGAGGAGAATTTTTGATAAGTTATGGCTCATGGGTAAAGGGCATGGGGAGAGTCGGAGTCCTGAAACGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGGAGATATGAAATCTTCTGGATCATATACAAGACAGAGGAGGCACTCGATATCTTAG 1842 41.42 MKFMKLGSKPDAFRADGKTTRYVSSELPTDVTIFVGEVKFLVHKFPLLSKSNCLQKLVSKANEENSEEIHLVDFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEFLEMTEDIERGNLVFKIEVFLNSSIFRSWKDSIIVLQTAKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSEVDRIVEDGIKYQKKIDSVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRNIGCSCSFLLKLMKVAILVGADDALREDLVKRIGLKLHEASVKDLLILAQSPQVTRYDVELVYRIVNQYFVHQKFNRNTDVIERSEKGAENLLLGHGSSLNVAKLIDEYLAEIADDPNLSLASFIDLSQSIPEFARPIHDRLYKAIDIYLKVHPSLTKADKRKICGLIDVKKLTTEASMHAAQNEQLPLRVVVQVLFFEQVRASVSVEAQNNSRDSSSVMTSIDEECPKVLDSCKSLKHNMGHMKISEDVQKTKKLAKKSSKNSRSGMQLLPSRSRRIFDKLWLMGKGHGESRSPETSGSSQSPTSVVPGDMKSSGSYTRQRRHSIS 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20957339 20962598 - Lsi08G012500.1 Lsi08g01250 669176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01250 613 MobiDBLite consensus disorder prediction 528 613 - -
Lsi08g01250 613 Pfam BTB/POZ domain 26 114 IPR000210 GO:0005515
Lsi08g01250 613 Gene3D Potassium Channel Kv1.1; Chain A 16 120 IPR011333 -
Lsi08g01250 613 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Lsi08g01250 613 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Lsi08g01250 613 Pfam NPH3 family 211 464 IPR027356 -
Lsi08g01250 613 SUPERFAMILY POZ domain 20 114 IPR011333 -
Lsi08g01250 613 MobiDBLite consensus disorder prediction 579 613 - -
Lsi08g01250 613 MobiDBLite consensus disorder prediction 528 542 - -
Lsi08g01250 613 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 601 IPR029961 GO:0060918|GO:0099402
Lsi08g01250 613 PANTHER OS12G0117600 PROTEIN 4 601 IPR043454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01250 - - - csv:101210907 1165.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01029 Lsi-Chr3:19861510 Lsi08g01250 Lsi-Chr8:20957339 0 dispersed
Lsi04g00596 Lsi-Chr4:5493004 Lsi08g01250 Lsi-Chr8:20957339 1.43E-152 dispersed
Lsi08g01250 Lsi-Chr8:20957339 Lsi03g02025 Lsi-Chr3:31632267 2.77E-110 dispersed
Lsi11g01363 Lsi-Chr11:22232046 Lsi08g01250 Lsi-Chr8:20957339 7.48E-70 dispersed
Lsi08g01250 Lsi-Chr8:20957339 Lsi01g00904 Lsi-Chr1:7278376 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01250 Lsi_Chr08 FPKM 8.794977 9.545248 8.922853 8.858857 12.626293 13.450257 12.178426 21.958963 19.402554 20.429493