Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01251 ATGGCATTAAACGACGACGCATCGAGGAAGACAACGGGGTCGGTATTAAGCCAAAAGAGAAACCTTCCTTTGAGCAACACCGGCATGGCTATTGCTGCCACTCTCCTCCTCGGAATCGGCTACATGGTTTATAAGAAGAAAGATCCCATTCCCATTCATCGTCATCATCCATCCATGGCTGGTTTTTCAAGGGCTTTGTTTCTTCTCACATTTTTCCTCTTCAGCTTCTCCGAAGCTAGAGAGATCTTGGTCGGGGGCAAATCCAATGCCTGGAAAATCCCTTCTTCTCAATCTCAATCTCTCAATCAATGGGCTGAAACCTCCCGCTTTCGCGTCGGCGATACTCTCGTGTGGAATTACGAAGAAGGGAAAGATTCGGTACTGAAAGTGAGGAAGGAAGATTATGAAGCCTGCAATACCGAAAACCCAGAACAGATATTTGAGGATGGGAATACGAAAGTGGAGCTACACAAACCAGGCCCATTTTATTTCATCAGTGGGGCAAATGGTCACTGCGAGCAGGGCCAGAAGCTGATTGTTGTGGTTGTGACTCCTCGCCGAAGGTTCATAGGCATCTCTCCGGCGCCTTCTCCGGCGGAGAGTGAGGGTCCAGCAGTTGCTCCGTCGAGTGGAGCTGCAAATTTGAAGGTTGGGTTTTTGGCGGTAATTGTCGGAATTTTGGGTGTTGGAGTTGGATTGCTGTGA 705 48.79 MALNDDASRKTTGSVLSQKRNLPLSNTGMAIAATLLLGIGYMVYKKKDPIPIHRHHPSMAGFSRALFLLTFFLFSFSEAREILVGGKSNAWKIPSSQSQSLNQWAETSRFRVGDTLVWNYEEGKDSVLKVRKEDYEACNTENPEQIFEDGNTKVELHKPGPFYFISGANGHCEQGQKLIVVVVTPRRRFIGISPAPSPAESEGPAVAPSSGAANLKVGFLAVIVGILGVGVGLL 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20976998 20979817 + Lsi08G012510.1 Lsi08g01251 669177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01251 234 CDD OsENODL1_like 80 182 IPR041846 -
Lsi08g01251 234 PANTHER BLUE COPPER PROTEIN 53 230 IPR039391 GO:0009055
Lsi08g01251 234 Pfam Plastocyanin-like domain 91 176 IPR003245 GO:0009055
Lsi08g01251 234 ProSiteProfiles Phytocyanin domain profile. 80 184 IPR003245 GO:0009055
Lsi08g01251 234 Gene3D - 78 186 IPR008972 -
Lsi08g01251 234 PANTHER EARLY NODULIN-LIKE PROTEIN 3 53 230 - -
Lsi08g01251 234 SUPERFAMILY Cupredoxins 79 183 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01251 - - - csv:101210664 265.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02065 Lsi08g01251 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00619 Lsi-Chr5:7619886 Lsi08g01251 Lsi-Chr8:20976998 4.20E-31 dispersed
Lsi07g01117 Lsi-Chr7:16596660 Lsi08g01251 Lsi-Chr8:20976998 1.20E-20 dispersed
Lsi08g01251 Lsi-Chr8:20976998 Lsi10g01609 Lsi-Chr10:20579312 2.98E-27 dispersed
Lsi04g02065 Lsi-Chr4:27778890 Lsi08g01251 Lsi-Chr8:20976998 4.69E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi08g01251 CCT 67 234 Phytocyanin Superfamily AT5G25090 50.9 1.2e-37 153.3
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi10g01112 . 19 229 Phytocyanin Superfamily AT1G08500 58.0 4.7e-63 238.0
Lsi06g00445 . 30 135 Phytocyanin Superfamily AT2G27035 58.5 1.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01251 Lsi_Chr08 FPKM 735.524231 810.86084 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0