Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01252 ATGGACAATGGATCTCTCCGTGAAGCTCCAAGAATGGCGAAAGAACCAAATTCCGATCCATCCAACAACAACAAAGTCCTCTCGATCATGTCGCAGCCATTCCGGTGGCTTAAAATGCTCTCATCGGAGCTAAATCCGAGTTTCATCGCCGGTGTGATCCTGGTCTACGGCTTAAGCCACGGCTTCTCGAGCTCCTATTTCAAAGTCGTCTCCGATTACTACTGGAAAGACGTGCAGAAGTTACAGCCGTCAGTAGTTCAGATCTACATCGGGATTTACGCGATTCCATGGGTGATGAAGCCGATTTGGGGGCTATTGACGGACGCGTTTCCAGTGAGAGGTTACTTGCGGCGGCCGTATTTCGTGATTTCGGGGGTGGTTGGAGCGACGTCGGCAGTGGCGGTGGCAGTGAAGGGAGGATTGGGGGTTTTGGAAGCTTTAGGGCTTTTGATTGGGATTTCAGGGGCGATGGCGATGGCGGATGTGACGATTGATGCTTGCATTGTGAGAAATAGCATTGAAGTGCAGTGGTTAGCGCAAGACCTGCAAAGCCTTTGTGGAGCTTGTTCTTCCATTGGGCATTTGATTGGATACTCCACCAGTGGCGTTTTTGTTCATCTTCTCGGCGCTCAGGAAGCACTTGGAATCTTGGCAATTCCTCCAACCATGATATTATTGTTGGGCTTCTTCATGCATGAGACACCATCCACCACCCTCCAATATAATGGGAAGTCCAAGGAATCGGTAGGGCTCATTTACGCAGTCGGCTCAGCGGCTTCTCTAATCGGAGTACTAATCTACCACAAAACCCTCAGAGACTTAAAATTCCGACGAATCCTCTTCTTCGCTCAAATCTTCTACGGCGTGGCCGGATTTCTCGACGTCATCTTCGTCCTCCGGTGGAATTTAGCCCTAAAAATTCCGGATCAGTTATTCGTGGTATTGGAAGAGTGCGTTACTCGAATCGTGACGCGAATCCGGTGGACGCCGATGATGGTTCTGAACACTCGACTCTGTTCCGTGGGGATCGAAGGGACATTCTTCGCATTATTGGCTTGTATTGATAGCCTGGGGACGCTGTGCTCGAAATGGAGCGGCGGATTGGTCCTCCATGCGTTTGGAGTAACGAGGAGTGATTTTAGGAACCTGTGGTTGGTGGTTCTGCTTCGGACTGTGTTGAGATTTGTGGTTGTGGCGTTCGTTTTTCTTGTTCCTGATGCGAATCAATCGGACATTTTGGTTCCGTCCGATCAGACGATGATTAGAAAGAATTCTTCTTCGACGAGTGTGAAGGAAGATGGCGATAGCATTCCTCTTGTGTCCATGAAAGGCGAGGGGCGAGGTTAG 1347 49.81 MDNGSLREAPRMAKEPNSDPSNNNKVLSIMSQPFRWLKMLSSELNPSFIAGVILVYGLSHGFSSSYFKVVSDYYWKDVQKLQPSVVQIYIGIYAIPWVMKPIWGLLTDAFPVRGYLRRPYFVISGVVGATSAVAVAVKGGLGVLEALGLLIGISGAMAMADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGVFVHLLGAQEALGILAIPPTMILLLGFFMHETPSTTLQYNGKSKESVGLIYAVGSAASLIGVLIYHKTLRDLKFRRILFFAQIFYGVAGFLDVIFVLRWNLALKIPDQLFVVLEECVTRIVTRIRWTPMMVLNTRLCSVGIEGTFFALLACIDSLGTLCSKWSGGLVLHAFGVTRSDFRNLWLVVLLRTVLRFVVVAFVFLVPDANQSDILVPSDQTMIRKNSSSTSVKEDGDSIPLVSMKGEGRG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20981797 20986055 + Lsi08G012520.1 Lsi08g01252 669178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01252 448 SUPERFAMILY MFS general substrate transporter 51 402 IPR036259 -
Lsi08g01252 448 MobiDBLite consensus disorder prediction 1 25 - -
Lsi08g01252 448 CDD MFS_FBT 51 391 - -
Lsi08g01252 448 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 245 442 IPR039309 -
Lsi08g01252 448 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 14 241 IPR039309 -
Lsi08g01252 448 Pfam BT1 family 245 412 IPR039309 -
Lsi08g01252 448 Pfam BT1 family 61 226 IPR039309 -
Lsi08g01252 448 PANTHER FOLATE-BIOPTERIN TRANSPORTER 6-RELATED 245 442 - -
Lsi08g01252 448 PANTHER FOLATE-BIOPTERIN TRANSPORTER 6-RELATED 14 241 - -
Lsi08g01252 448 MobiDBLite consensus disorder prediction 424 448 - -
Lsi08g01252 448 Gene3D MFS general substrate transporter like domains 47 405 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01252 - - - csv:101204527 579.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01252 Lsi-Chr8:20981797 Lsi09g01311 Lsi-Chr9:20975512 2.61E-18 dispersed
Lsi08g01252 Lsi-Chr8:20981797 Lsi08g01256 Lsi-Chr8:21013412 5.45E-101 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g592 . . . . . . . . Cmo05g00350 . . Cma05g00346 . . Sed11g1138 . . Bhi04g00055 Tan02g2767 Cmetu03g2109 . Hepe10g0213 . Lcy13g1837 . . . . . . . . . Cone17ag0975 Cone20ag0317 . . . Cme03g01573 . . . . . . . . . . . . . . Car05g00292 Cpe11g00291 . . . . . . . . Cla08g01370 Cam08g1839 . Cco08g1550 Clacu08g1534 . Cre08g1317 Lsi08g01252 . Chy03g01080 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012952 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01252 Lsi_Chr08 FPKM 56.200176 69.773026 29.20657 24.977667 25.126257 25.401459 25.157167 42.535645 44.618519 44.742546