Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01255 ATGAGTTCATTTTCCATCACTCGGAAGAAGACTCCTTTCCAAAAACACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGATGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATCAACCCCAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCTCCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGACCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGTGAAGGACGCCATGGAGAAATCTCAACACCATCTAGTCGATTTGATGAACTGCCTGATGACTTTGATCCTAGTGGAAAGTTTCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGGCAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTACGGGTATGAGCTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCATCCCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAATCAAAATTCTGAACTGGTTTTGACGCCCAACATTCCTGATATTATTGTTGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTACGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCGACTGCTAAAAGCCCAGAGCTTGAAAAGGAGTCTGGTCCCACTTATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACGTTAACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCACTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACATATGGTCTGATTGGTTTCTGTTCTCTGATGCATACGTGAATGGATTGCGAGCCACGTTCCTTCGCTTGGGCAATTCTGGTGTAATCCCTTTTCATTCATTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCTAATTGTGATGATTTAGGAGATGGGAATAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGTTGAACGAGATCCAGCAGAAATTTCTGGTTGGAACCGTTTTGGGGATGACGAGGCAGATTTCCAGAGGATGGGTTCTGTGCCTATGGTTCAAACTCTTAACATTCCGCAGCCTGAGCTAAAAGGCTTCACAAAGTCTGGGAAAAATGATCCTGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACTAGGGGTCTCGGTTTAAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTTCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGGCAAGTGTCCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGCGTAGAGGTGGCTTTGATCGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGCAGAGGAAATTGAGAGGAGAGTTTTGATATATCGGAAACAACTAGAATCTGAATACGGACTGTCAGATTCCAATGAGACTGCATCAAGGAAGAAGAGGAGGGATAGACCGGATGATGTCCATGATTCATCAAGGAAGCTGCAGCGTGGCCAGAGCCATAGTGATAGCCCAGTACGAAAGTCATCGAACCGAGACAGAGACAGGGAAAATGATGTGGACAGGGAACGAGAAAGATCACGAGACAGGGATCGGGAAAAGAGTGGAAGCAGAGAAAGGGACGATCACGAACGAGATAGAGGTAAGGAAAGAGATAGGGATAGGAGAAAACGTGGAAAATAA 2724 44.05 MSSFSITRKKTPFQKHREEEEAKKKREDDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQDREHWREGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDIIVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNIWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGNKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKVERDPAEISGWNRFGDDEADFQRMGSVPMVQTLNIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGTRGLGLSYSSSGSENAGDGSSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSAEEIERRVLIYRKQLESEYGLSDSNETASRKKRRDRPDDVHDSSRKLQRGQSHSDSPVRKSSNRDRDRENDVDRERERSRDRDREKSGSRERDDHERDRGKERDRDRRKRGK 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20994075 21011262 + Lsi08G012550.1 Lsi08g01255 669181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01255 907 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Lsi08g01255 907 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Lsi08g01255 907 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Lsi08g01255 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 261 IPR000504 GO:0003723
Lsi08g01255 907 Gene3D - 766 817 - -
Lsi08g01255 907 PANTHER RNA PROCESSING PROTEIN LD23810P 5 513 - -
Lsi08g01255 907 PANTHER RNA PROCESSING PROTEIN LD23810P 514 902 - -
Lsi08g01255 907 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Lsi08g01255 907 PANTHER - 514 902 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 1 174 - -
Lsi08g01255 907 Coils Coil 767 787 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 807 907 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 633 666 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 724 742 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 707 722 - -
Lsi08g01255 907 ProSiteProfiles CID domain profile. 443 513 IPR006569 -
Lsi08g01255 907 Gene3D - 444 514 IPR008942 -
Lsi08g01255 907 SUPERFAMILY RNA-binding domain, RBD 179 277 IPR035979 GO:0003676
Lsi08g01255 907 MobiDBLite consensus disorder prediction 820 900 - -
Lsi08g01255 907 Pfam cwf21 domain 767 813 IPR013170 -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 99 169 - -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 65 80 - -
Lsi08g01255 907 SMART cwf21_2 766 815 IPR013170 -
Lsi08g01255 907 MobiDBLite consensus disorder prediction 691 772 - -
Lsi08g01255 907 SMART rrm1_1 187 263 IPR000504 GO:0003723
Lsi08g01255 907 MobiDBLite consensus disorder prediction 11 35 - -
Lsi08g01255 907 SMART 558neu5 450 588 IPR006569 -
Lsi08g01255 907 CDD RRM_SR140 185 268 IPR035009 -
Lsi08g01255 907 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Lsi08g01255 907 MobiDBLite consensus disorder prediction 647 666 - -
Lsi08g01255 907 Coils Coil 448 468 - -
Lsi08g01255 907 PANTHER - 5 513 - -
Lsi08g01255 907 Gene3D - 97 269 IPR012677 -
Lsi08g01255 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01255 K12842 SR140; U2-associated protein SR140 - csv:101209274 1565.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01255 Lsi-Chr8:20994075 Lsi09g00425 Lsi-Chr9:4503185 6.19E-09 dispersed
Lsi08g01255 Lsi-Chr8:20994075 Lsi08g00902 Lsi-Chr8:17380734 4.93E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01255 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0