Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01259 ATGGCGAGCGACGAAGAGAGAGCTCTAGAGCACCAGCTGGAGGTTCAATTGCATGAGCAGAGAGAGTCTCTCGCCGCCTTACAAGATGCCCTAGCCTCCGACGCCTCCAATCCGGAGCTTCTCGAGGTTCACGAGGAGCTTGTCCAAGCAATTAAAGATGCTGAGGAAGGGCTGCTTCACCTTAAGCGTTCTAGGTTATTACGAGAAGCAGATTCGGTGTTGCGTGGTCGTGATAGTAACGCAGTGGAGGATGTTAAGGTGGAGCCTCTTGATCCTACGGATGTCAAACCTGAACCTCTTGAGGATCAGAGTTTCATCGTTGGATCGAAATGCAGATTCCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTTCTCACTCCTACAACTGAAAATATGTTGCTTCTTCCCTTTAGTAGTACCGAAGATCAGTTTGCTGCCTACTTACTAGATGAATATGCAAGTTCTTCTTACAGCAAAGATGTCGGTTTGGCACTAACTGCCGCTTATCGCATGGTATGTCATATTCTTTCACGTCGACCATGTAGATCCAACAACTCATTAAGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGTGCCAACAATTTGGAATCAGTCACTGGCAGGGTCCAGTATCTGGGCTCTCTCGTCTAGGAGTGACATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCACTTCAAGTTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAGCGTTGTCTGAGTATGCTCAAATTAATGATGAAGAGGAAAGTGATTCCAGCTTGGAACAGTCTGACTCAAGTGATAATGAAGAGGATGATTTGCAGGGTTTGGGGTTTCTTGAAAGCTCTACTCAGCAGAGGGGAATCCAGACGGAGACCACCATATTTGCTAAATGGGAGAACCATACCCGAGGAATTGCTTCCAAGATGATGGCTAATATGGGCTATCGCGAAGGAATGGGTCTGGGTGCATCTGGGCAGGGGATGCTGAATCCTATCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTCGATCATGCTCTAAAGTCACAAAAGGAGAATATTACTAATGAAGAAAATAATGGAAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGAGAAGAAGTTTGCCGCAGCGACACGGGCAGCTAAAGAGGAAGATGAGTCAAGACCTGATGTCTTTAATCTTATCAACAACCACCTTGCAATGCATAATGGAGCATTGAATGATGGATCCATGAAGAAACAGAAAGATAAAGGTTCAGCAGATGGGAAGAAGGTGGATAGACGAACCCTAATTGCGTACGATGATGAGGTGAAAGACTTGCGAATACGAATAGAGAAGCTTGAAGAAATGGTAAACAGAAATAAGAAAGAGAAGCTTGTTTACGAGGCTGCCTTAAGAAAGCTAAGTGAGACCCGGAAAGCTTTGGCTGAGGCCGAGGCAGCTCATGCATCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAGATGGTTGAAGTTTTAG 1596 44.99 MASDEERALEHQLEVQLHEQRESLAALQDALASDASNPELLEVHEELVQAIKDAEEGLLHLKRSRLLREADSVLRGRDSNAVEDVKVEPLDPTDVKPEPLEDQSFIVGSKCRFRHTDGRWYDGEIVGLDGSNSAKISFLTPTTENMLLLPFSSTEDQFAAYLLDEYASSSYSKDVGLALTAAYRMVCHILSRRPCRSNNSLRVDIPLTSLRRYVPTIWNQSLAGSSIWALSSRSDIWRHAELESWDDALQVAQVVFKGDGSSQKLGPEDIALSEYAQINDEEESDSSLEQSDSSDNEEDDLQGLGFLESSTQQRGIQTETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALKSQKENITNEENNGKKRSRGGKRKREKKFAAATRAAKEEDESRPDVFNLINNHLAMHNGALNDGSMKKQKDKGSADGKKVDRRTLIAYDDEVKDLRIRIEKLEEMVNRNKKEKLVYEAALRKLSETRKALAEAEAAHASASNAVTSREKEKRWLKF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21036313 21039369 + Lsi08G012590.1 Lsi08g01259 669185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01259 531 MobiDBLite consensus disorder prediction 433 453 - -
Lsi08g01259 531 MobiDBLite consensus disorder prediction 377 402 - -
Lsi08g01259 531 MobiDBLite consensus disorder prediction 439 453 - -
Lsi08g01259 531 SMART G-patch_5 328 374 IPR000467 GO:0003676
Lsi08g01259 531 Coils Coil 460 518 - -
Lsi08g01259 531 Pfam G-patch domain 330 372 IPR000467 GO:0003676
Lsi08g01259 531 MobiDBLite consensus disorder prediction 505 531 - -
Lsi08g01259 531 MobiDBLite consensus disorder prediction 278 301 - -
Lsi08g01259 531 ProSiteProfiles G-patch domain profile. 330 376 IPR000467 GO:0003676
Lsi08g01259 531 MobiDBLite consensus disorder prediction 377 392 - -
Lsi08g01259 531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 531 - -
Lsi08g01259 531 Coils Coil 10 30 - -
Lsi08g01259 531 Coils Coil 368 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01259 - - - csv:101208787 779.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01259 Lsi_Chr08 FPKM 3.792836 5.305291 3.699492 4.014661 15.068601 14.821261 16.347591 0.517889 0.363261 0.598825