Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01262 ATGAGGCCATTGTACTCGGCAGTTGGCACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACTCATTCCCTGGCCATCAAATTGGGTACCATTGCAGACATTTACACTTGCAACAATATCCTAAATGGGTATTGGAAATGCAAAGAGTTACGATCTGCAGACGTACTGTTCGACGGAATGCCGCTGAGAGACTCTGTATCTTGGAATACGATGATCGCGGGGCATATAAACTGTGGAAACTTGGAGGCTTCATGGGATGTTGTTAAATGCATGAGAAGATGTGGTTTTCAGCTGGATGAGTATACCTTTGGAAGCATGCTGAAGGGCATTGCTTGTGTTGGTATGTTTGATTTGGGACAGCAAGTACATTCTATGATCATTAAGATGGGTTACGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGACATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGTCGTTCTTAAATATATCGAAACAGAACTCTGTTTCGTGGAATGCAATGATTGCTGGATATGCCCAAACAGGTGACCGTGAGACCGCATTTTGGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCACATATGCTCCTCTTTTGCCATTGCTTGATGATGCTGACTTTTGTAACTTAACAAGGCAAGTCCATGGAAAAGTCATAAAACATGGATTGGAATCTGTTAATACAATGTGTAATGCATTGATCACTTCTTATTCAGAATGTGGATCCCTTGATGATGCCAAAAGGATTTTCAATTGTTCTGCAGGCATTCGGGATTTGGTGACATGGAACTCCTTGTTGGCTGCTTATCTGGTGCATAGTCGGGAAGATCTTGCTTTTAAACTCTTGATTGACATGCAAGAACATGGTTTTGAACCAGACTTGTATTCATACACAAGCATCATCAGTGCTTGTTTCGACGAAAAGCTTAGCAATAATGGGAAATCCTTACATGGGTTGGTGATAAAGAGAGGATTAGAACAGTCAGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACTGTGGTTCAATGAAAGAAGCCCTATGTATATTTGAATCCTTGGAGTCTAAGGACCGCGTGTCTTGGAACTCAATCTTAACTGGATTATCACAAACGGGGTTGAGCGAAGATGCAGTGAAGTCCTTTCTGCATATGAGATCTGCAGCAATGGACATTGATCACTATTCCTTTTCTGCTGTACTCAGATCATGCTCAGATTTGGCTACCTTTCAATTGGGACAACAGATTCATGTCTTGGCACTTAAATACGGTTTGGAGTCCAACGAGTTCGTTTCAAGTTCCTTAATCTTCATGTATTCCAAGTGTGGGATTATTGAAGATGCTAGAAGATCATTTGAAGAGGCTTCAAAGAACGCTTCAATCACTTGGAATGCACTTATGTTTGGTTATGCTCAACATGGTCAGTGCAATGTTGCATTAGACCTCTTCTTCCTAATGGAAGAGAAAAAGGTGAAAATGGATCACATAACCTTCGTTGCAGTTCTGACCGCCTGTAGCCATATCGGTTTAGTAGAACAGGGCAGCAAATTCTTGCGGTGTATGGAATCTGATTACGGCGTTCCTCCACGGATGGAGCATTACGCTTGTGCAGTTGATCTATATGGGCGTTCTGGGCGTCTTGAAGAAGCCAAGGCCCTGATTGAAGAAATGCCATTCAAACCGGACGCCATGGTGTGGAAGACATTCTTGGGCGCGTGCCGTTCTTGTGGCAACATTGAGTTAGCTTGTCAGGTTGCAAGCCATCTGCTAGAGATGGAGCCTGAAGAGCACTGCACTTATGTTCTTCTCTCAAACATGTATGGAAATCTAATGAGATGGGATGAGAAGGCCAAAGTGAAAAGACTAATGAAGGAAAGAGGAGTTAAGAAAGTCCCTGGTTGGAGTTGGATTGAAGTTAAGAATAATGTACATGCTTTCATTGCAGAAGATCATTCACATCCAAGTTGCCAACAGATCTACTTTTTGCTGGAAGCCCACAACATACTCAACGTTCCAATACAGCTCAACCACCCCATTCCAGAAACAGCCAAGCGACGGGAACTAGCCGCCGTTGCTGTCTCCGTCGCCGTCCCCACCACCATTGACGGCATTTGTTTTCTTAGTGAAACAGGTCCTTTGTAA 2178 42.84 MRPLYSAVGTSFRALSNLLLTHSLAIKLGTIADIYTCNNILNGYWKCKELRSADVLFDGMPLRDSVSWNTMIAGHINCGNLEASWDVVKCMRRCGFQLDEYTFGSMLKGIACVGMFDLGQQVHSMIIKMGYAGNVYAGSALLDMYAKCERLEDAYLSFLNISKQNSVSWNAMIAGYAQTGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTRQVHGKVIKHGLESVNTMCNALITSYSECGSLDDAKRIFNCSAGIRDLVTWNSLLAAYLVHSREDLAFKLLIDMQEHGFEPDLYSYTSIISACFDEKLSNNGKSLHGLVIKRGLEQSVPISNALISMYLKSDCGSMKEALCIFESLESKDRVSWNSILTGLSQTGLSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNASITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGSKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDAMVWKTFLGACRSCGNIELACQVASHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVKNNVHAFIAEDHSHPSCQQIYFLLEAHNILNVPIQLNHPIPETAKRRELAAVAVSVAVPTTIDGICFLSETGPL 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21046843 21052579 + Lsi08G012620.1 Lsi08g01262 669188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01262 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Lsi08g01262 725 PANTHER BNAA02G27730D PROTEIN 87 676 - -
Lsi08g01262 725 PANTHER BNAA02G27730D PROTEIN 21 95 - -
Lsi08g01262 725 PANTHER OS01G0913400 PROTEIN-RELATED 87 676 - -
Lsi08g01262 725 Pfam E motif 590 650 IPR046848 -
Lsi08g01262 725 Gene3D Tetratricopeptide repeat domain 445 680 IPR011990 GO:0005515
Lsi08g01262 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Lsi08g01262 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat 549 569 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat 372 399 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat 35 61 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat 238 260 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat 167 196 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat family 267 313 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat family 64 110 IPR002885 -
Lsi08g01262 725 Pfam PPR repeat family 472 518 IPR002885 -
Lsi08g01262 725 Gene3D Tetratricopeptide repeat domain 326 427 IPR011990 GO:0005515
Lsi08g01262 725 Gene3D Tetratricopeptide repeat domain 18 114 IPR011990 GO:0005515
Lsi08g01262 725 Gene3D Tetratricopeptide repeat domain 115 213 IPR011990 GO:0005515
Lsi08g01262 725 Gene3D Tetratricopeptide repeat domain 214 325 IPR011990 GO:0005515
Lsi08g01262 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Lsi08g01262 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Lsi08g01262 725 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Lsi08g01262 725 TIGRFAM PPR: pentatricopeptide repeat domain 66 100 IPR002885 -
Lsi08g01262 725 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Lsi08g01262 725 PANTHER OS01G0913400 PROTEIN-RELATED 21 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01262 - - - csv:101204281 1274.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01262 Lsi-Chr8:21046843 Lsi01g01115 Lsi-Chr1:9215410 6.15E-24 dispersed
Lsi08g01262 Lsi-Chr8:21046843 Lsi02g02283 Lsi-Chr2:29396406 7.33E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011939 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01262 Lsi_Chr08 FPKM 7.664306 9.160109 8.613945 7.569365 4.966677 5.520701 6.045597 20.962454 22.216749 23.347446