Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01265 ATGAGGAATGTCGTTGCGCGCCTCAACCGCCACCGCCTGCTCACTCCGGCATACCGAAATTTACGTCATGTCAATGATTTTGGAAAATGCATATCATTGGGATATTTGCAAGATATTCAAGCTCTGAGGAGACGAGATGTTTATCTGTTGACAAACTTGTTTCACCAAAACTCATTCTCAACCGGCTATTCGAGCGTACATGGTGAAAGGCCATCTGCAGAGTATGCGAAGTTGAGAAAGCAATTGCTGGAAAATGAATTTGGGCATGCACTTGGAACTTACAGATCCAAAAGACTTTCCTCTGTCTATCACTTTGGCCCATTTTTAGCATTCTATAGGGCAGCAATTATTTCATTCCATGTATTGAAGCTAACCATATGGCAGTTCTTCGTTCATGACTTAAAAAAGCGTGCTATCAAGCTTGGGCAGGCTTTGAGCACAAGGCCAGATATATTGCCAACAGTGTATTGCCAAGAACTTGCAAGGTTACAGTTTGAACTTTCTTTTTCTAAGGATAAAATACCTCCATTTCCAACTCACCAAGCAATCAAATCTATCGAAAATCAGTTGGGCCGTCCTGTTTCACAAATTTTTGCTGATATTAGTCCAGAGCCCATTGCAGCTGCATCCTTGGGGCAGGTTTATAAGGCTCACCTGCATTCTGGAGAGCTTGTAGCTGTCAAAGTGCAAAGGCCTGGCATGTCTCTTTCATTGACTCTTGATGCCTTGTTGTTCCAGATGATTGGTGGCCAGCTAAAACGATTTGCCAAGGCCCGGAAAGATTTATTAGTAGCTGTCAATGAAATGCATTTGCATGATTTTCTTCATAACAATGCAGTAGGCGACAGTGGGAAGAGTTCTGCAGTTGATGGCTCTGTTAAATATAAGAAATCAAACTGTGTTAAAGTCCCCAAAATATATTGGGACTTTACTCGAACGGCTGTGCTTACCATGGAATGGATTGATGGAATAAAGCTTACTGACGAAGTTGGCTTGCAAAAGGCTCATTTGAATAGAAGGGAGCTCATTGACCAGGGATTGTATTGCTCTTTGAGGCAATTGCTTGAGGTGGGTTTTTTCCATGCTGATCCACATCCAGGAAACCTTGTTGCTACTGAGAATGGCTCTCTTGCATATTTTGACTTTGGGATGATGGGTGATATCCCTCGGCATTACCGCGTTGGACTGATTCAAGTGCTGGTGCACTTTGTTAATCGTGACTCGCTTGGTTTGGCCAATGATTTTCTTTCTCTGGGATTCATTCCTGAAGGGGTTGATATTCGATTAGTTTCTGATGCTCTAAATGCATCATTTGGCGATGGAAAAAAACAGTCACTGGATTTTCAGGGAGTAATGAACCAGCTATACAGTGTGATGTATGAATTTAATTTTTCCCTTCCTCCGGACTATGCCTTGGTCATAAGAGCGTTAGGGTCACTTGAAGGCACTGCAAAAGTCCTTGATCCTGAATTCAAGGTCTTAGAAAGTGCATATCCTTTTGTCATTGGGAGGCTTTTGGAAGATCCAAACCCTGATATGAGAAGAATTTTAAGGGAACTCCTCATCCGAAATGATGGATCCATTAGGTGGAATCGGCTTGAACGCTTAGTTGCAGCCATTTCTGAACAGGCTTCCGAGTCCAGTGAGGAATCCCTTGAGGATAATTCTTCGAATCCTCTTGGATGGAAATCATTTGACATGCCAGCAGTTGTGGCAGCGACTGAGGATCTTTTTCTTTTCATTCTATCTAAGAAAGGTTCAAGAGTACGTGTTTTCCTCCTCCGCGACATCATTGCAACCGTTGACATTGTTCTGCAGGATGAAGTTTTTGGGTGCTCATCCGATGAGAAGCGTCAGACAAGATCCGAGGATCATGCTATGCTGGAAAGAGTTGTTCACGGATTTCAGTGCCTCCACGAAGCAATAAAGTTAGCACCACAAGTGTGGATGTCTATGCTTATTCGCATGGCATTAAAGCCTGAGGTTCATAGTTTCTCTCTGGACGTCATTTCAAGCATTATGAAGCATGTTGGAAGAAAAATCCCTGACCATCTTTGGGTTTGTATTTCAAGATTCCTTCATGACTTAGATAGAGACTACGGTTCTAACAAAGTATGA 2118 42.68 MRNVVARLNRHRLLTPAYRNLRHVNDFGKCISLGYLQDIQALRRRDVYLLTNLFHQNSFSTGYSSVHGERPSAEYAKLRKQLLENEFGHALGTYRSKRLSSVYHFGPFLAFYRAAIISFHVLKLTIWQFFVHDLKKRAIKLGQALSTRPDILPTVYCQELARLQFELSFSKDKIPPFPTHQAIKSIENQLGRPVSQIFADISPEPIAAASLGQVYKAHLHSGELVAVKVQRPGMSLSLTLDALLFQMIGGQLKRFAKARKDLLVAVNEMHLHDFLHNNAVGDSGKSSAVDGSVKYKKSNCVKVPKIYWDFTRTAVLTMEWIDGIKLTDEVGLQKAHLNRRELIDQGLYCSLRQLLEVGFFHADPHPGNLVATENGSLAYFDFGMMGDIPRHYRVGLIQVLVHFVNRDSLGLANDFLSLGFIPEGVDIRLVSDALNASFGDGKKQSLDFQGVMNQLYSVMYEFNFSLPPDYALVIRALGSLEGTAKVLDPEFKVLESAYPFVIGRLLEDPNPDMRRILRELLIRNDGSIRWNRLERLVAAISEQASESSEESLEDNSSNPLGWKSFDMPAVVAATEDLFLFILSKKGSRVRVFLLRDIIATVDIVLQDEVFGCSSDEKRQTRSEDHAMLERVVHGFQCLHEAIKLAPQVWMSMLIRMALKPEVHSFSLDVISSIMKHVGRKIPDHLWVCISRFLHDLDRDYGSNKV 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21065371 21073639 + Lsi08G012650.1 Lsi08g01265 669191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01265 705 ProSiteProfiles Protein kinase domain profile. 200 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01265 705 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 45 686 - -
Lsi08g01265 705 CDD ABC1_ADCK3-like 172 415 - -
Lsi08g01265 705 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 45 686 - -
Lsi08g01265 705 Pfam ABC1 atypical kinase-like domain 171 412 IPR004147 -
Lsi08g01265 705 SUPERFAMILY Protein kinase-like (PK-like) 171 395 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01265 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101207577 1268.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01265 Lsi-Chr8:21065371 Lsi09g01157 Lsi-Chr9:18575475 3.67E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g622 . . . . Bpe02g01271 . . . . Cmo12g00328 . . . Car12g00359 Sed03g1658 Cpe07g00333 . Bhi04g00073 Tan02g2784 Cmetu03g0254 . Hepe10g0203 . Lcy13g1848 . . . . . . . Cone4ag1726 . . . . . . Cme03g01558 . . . . . . . . . . . . Cma12g00376 . . . . . . . . . . . Cla08g01381 Cam08g1852 Cec08g1430 Cco08g1563 Clacu08g1547 . Cre08g1330 Lsi08g01265 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012518 0 3 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01265 Lsi_Chr08 FPKM 23.960852 26.398125 195.932495 194.667496 9.661992 9.512484 10.002411 4.865514 4.659105 4.387715