Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01266 ATGGCTTCCAAGCTTTGCGACTCGTGTAAGTCGGCGACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCTAAAGTACACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCGCTTGCGACCACGATATTCACTCTGCTAATCCCCTTGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCTTTCTACGATACCTCCAACTCCGAGAACTCACTCGCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGGCCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAACTTCAGATCTAAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCTGTTCAGAGCAAAGGCGTTAATCTCTCATCAGTAAACGATCGTTGCTTCGGCATAGACTTCCCCGGCACAAAATCGTTACCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTCGTGCCGGACGGCAACGCGATGACGGATGTATCAAATTCGTACACGAAACCGTCGACGGAATCGACGGTGCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCAAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1014 53.16 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPSAAINFLDGRYFSDVDADAADVSREEAEAASWLLPNPNPKAIETSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPGTKSLPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNSYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21077088 21078568 - Lsi08G012660.1 Lsi08g01266 669192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01266 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Lsi08g01266 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Lsi08g01266 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Lsi08g01266 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Lsi08g01266 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lsi08g01266 337 CDD Bbox1_BBX-like 5 48 - -
Lsi08g01266 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Lsi08g01266 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lsi08g01266 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lsi08g01266 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lsi08g01266 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00983 Lsi-Chr7:13335795 Lsi08g01266 Lsi-Chr8:21077088 3.10E-46 dispersed
Lsi08g01266 Lsi-Chr8:21077088 Lsi11g00747 Lsi-Chr11:8272990 3.47E-80 dispersed
Lsi09g00025 Lsi-Chr9:238636 Lsi08g01266 Lsi-Chr8:21077088 6.56E-09 dispersed
Lsi08g01266 Lsi-Chr8:21077088 Lsi06g01109 Lsi-Chr6:21349276 3.24E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25804 PF00643 zf-B_box 3.00E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01266 - - csv:101208063 627.091