Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01266 ATGGCTTCCAAGCTTTGCGACTCGTGTAAGTCGGCGACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCTAAAGTACACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCGCTTGCGACCACGATATTCACTCTGCTAATCCCCTTGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCTTTCTACGATACCTCCAACTCCGAGAACTCACTCGCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGGCCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAACTTCAGATCTAAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCTGTTCAGAGCAAAGGCGTTAATCTCTCATCAGTAAACGATCGTTGCTTCGGCATAGACTTCCCCGGCACAAAATCGTTACCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTCGTGCCGGACGGCAACGCGATGACGGATGTATCAAATTCGTACACGAAACCGTCGACGGAATCGACGGTGCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCAAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1014 53.16 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPSAAINFLDGRYFSDVDADAADVSREEAEAASWLLPNPNPKAIETSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPGTKSLPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNSYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21077088 21078568 - Lsi08G012660.1 Lsi08g01266 669192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01266 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Lsi08g01266 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Lsi08g01266 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Lsi08g01266 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Lsi08g01266 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lsi08g01266 337 CDD Bbox1_BBX-like 5 48 - -
Lsi08g01266 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Lsi08g01266 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lsi08g01266 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lsi08g01266 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lsi08g01266 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01266 - - - csv:101208063 627.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00983 Lsi-Chr7:13335795 Lsi08g01266 Lsi-Chr8:21077088 3.10E-46 dispersed
Lsi08g01266 Lsi-Chr8:21077088 Lsi11g00747 Lsi-Chr11:8272990 3.47E-80 dispersed
Lsi09g00025 Lsi-Chr9:238636 Lsi08g01266 Lsi-Chr8:21077088 6.56E-09 dispersed
Lsi08g01266 Lsi-Chr8:21077088 Lsi06g01109 Lsi-Chr6:21349276 3.24E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25804 PF00643 zf-B_box 3.00E-06 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01266 Lsi_Chr08 FPKM 12.072695 13.715955 21.081526 21.441339 17.565983 17.152241 19.018557 23.69108 22.866528 24.739672