Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01268 ATGTCATCGAGAATTATAAACTTGGATTATCTTGACTGTAGGGTTGCTCGCACAATGGCTGCTTCTCGGGGTGGGAGGCCATTTTCAACAGACTCTAATAAGATCGACAAACCATTCAAGGTTGAGGAAGCTGAAACAGTTGATGTTCCCCCACCTCCAACTGAGAAGTTGCTGGTGCTGGGTGGAAATGGATTTGTGGGCTCCCATATCTGTCAAGAAGCTCTAAATCGTGGCCTTACAGTTGCTAGCCTTAGTAGGTCGGGTAGATCATCAATACGTGATTCTTGGGCTAACAGTGTAATTTGGCATCAAGGAAACCTTCTTTCACCTGATTCATTGAATGAAGCTTTTGACGGTGTTACAGCTGTTATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCAGATAAAGGTGTGAAGAGATTTGTCTATATCTCTGCTGCTGATTTTGGCTTGGCTAATTACTTGCTACAGGGATATTATGAGGGAAAGCGAGCGGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGTAATGTTGGGAGCGTGAAGTTACCTCTGGGAGTAATTGGTTCTCCTCTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAACTACCACTCGTTGGTCCTCTGTTTACTCCTCCGGTAAGTGTGACGTCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATCGACATCTATGGCATACAACGATACAGTCAACACAAGTCAAAATAG 858 45.1 MSSRIINLDYLDCRVARTMAASRGGRPFSTDSNKIDKPFKVEEAETVDVPPPPTEKLLVLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRDSWANSVIWHQGNLLSPDSLNEAFDGVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYYEGKRAAETELLTKFPYGGVILRPGFIYGTRNVGSVKLPLGVIGSPLEMVLQHAKPLHQLPLVGPLFTPPVSVTSVARVSVRAATDPVFPPGIIDIYGIQRYSQHKSK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21106367 21111140 + Lsi08G012680.1 Lsi08g01268 669194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01268 285 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED 19 283 - -
Lsi08g01268 285 PANTHER BNAANNG24990D PROTEIN 19 283 - -
Lsi08g01268 285 Gene3D - 51 278 - -
Lsi08g01268 285 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 275 IPR036291 -
Lsi08g01268 285 Pfam NAD(P)H-binding 61 205 IPR016040 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01268 - - - csv:101207328 509.605
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g630 . . . . . . . . Cmo05g00338 . . Cma05g00336 . . . . . Bhi04g00078 Tan02g2789 . . . . Lcy13g1851 . . . . . . . . . Cone17ag0963 Cone20ag0304 . . . Cme03g01554 . . . . . . . . . . . . . . Car05g00280 Cpe11g00281 . . . . . . . . Cla08g01384 Cam08g1855 Cec08g1434 Cco08g1567 Clacu08g1551 . Cre08g1334 Lsi08g01268 . Chy03g01065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007661 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01268 Lsi_Chr08 FPKM 69.812752 71.538788 53.513355 54.853519 125.425369 105.60376 125.9207 31.504501 32.066498 30.034882