Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01270 ATGGTCTTGTTCGCGATGGCGGCGACGGCGGAGGGAGACGCGGCGGCAGTGAAAGTGAAGGTGGGTGTAGTTTTGAATTCGGATGGTTTTGGGAAGATGGGATTGAGTTGCATATCAATGGCTCTCTCAGATTTTTATGCTTCTCGGAGTTATTATAAGACAAGAGTGATTCTCAAGCCCATGGACTCTAATGGCACCGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAGGTTCAAGCCATTATAGGGCCAACAAGCTCAATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCACAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCCCATCGTAGCTCCTTCTTCTTCCGAGTCGCCCAAGACGATTCCTCTCAAGTAAAAGCCATCGGAGCCATTGTCAAAACCTTCAAATGGCGACAAGTCGTCCCAATCTACGTCGACAACGAGTTTGGTGACGGCATCATCCCTTACCTCGTCGACGCACTCCAAGAAGTCAATGCCCACATACCTTACCAAAGCATCATCTCCCCAGACGCAACCGACAACCATATCACAAGCGAACTCTACAAATTAATGACGATGCAGACGCGAGTGTTCGTAGTACACATGTTACCCAAACTCGCGATACAAATCTTCATCAAAGCAAAACAAATTGGAATGATGAAAAAAGGGTATGTTTGGATAATAACGGATGGAATTACGAACTCATTGGAGTCAATAAATCCTTCAACTTTTGAGTCAATGCAAGGAGTTATTGGAATAAAAACTTACGTCCCTAGAACTAAAAGGCTTAAATCTTTTGAAAGTGATTGGCGGAAGAGATTTTTAAGGTATTATCCAATTACAGAAGAGATTCCTGATTTGGATGTGTTTGGATTATGGGCCTACGATGCGGCTTGGGCCTTAGCTATTGCAGTGGAAAAAGCTGGGACGGACAACCTTAAATACAGCCCGACAAATGTTACAACGTTAAACTATTTATACAACCTTGGTGTGAATGAAAATGGTCGGAAATTACGTGATGAATTTTCAAAGGTGAAATTCAAGGGTTTGGCTGGGGAATTTAGTGTAAAAAATGGGCAATTGGAGTCTGAGATTTTTGAGATAGTGAATTTGATTGATAATGGGAGAAGAAATGTGGGATTTTGGTCGTCGGAAAGTGGGATGAGGAGGGAATTGAAAGGAGGGAGTAGTGGGCTGAGAAGGATAATATGGGGTGGAGATTCGGTGGCTCCGCCGAAAGGGTGGGAGATTCCGACGAATGAGAAGAAATTGAGAGTGGTGGTTCCGGTAAAGGATGGATTTTGGGAATTTGTGAGTGTGGTTCGTGATCCTGAGACTAATGAAACGGAAGTAAGTGGTTATTGTATAGATGTGTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCCGTTGCTTATGAACTTATTCCTTTCCATAAATCGGCGGCGGAGCCAGGTGGTACCTACAATGACTTGGTTTATCAAATCTATCTTGGGGAGTTCGATGCTTTGGTGGGTGACTTAACAATAAGAGCAAACAGATCAAAATACATAGACTACACATTACCATTTGCAGAGTCAGGAGTGTCAATGGTTGTGCCAATAATGAGCACTAAGAACACTAATGCATGGGTCTTCATAAAGCCTCTAACTGGCCGTCTATGGTCACTCACTGGCGGTTTCTTCCTTGTAATTGCACTTGTTGTTTGGATTTTAGAGCATCGACTCAATGAAGACTTTCGTGGAACTCCATGGAATCAGTTTTGCACTAGTCTTTGGTACTCTTTTTCCACCATGGTTTTTGCCCATCGGGAGGTAACATTGAACCATTGGACAAGATTTGTGGTGATAGTATGGCTATTTGTGGTTCTGATAATAACACAAAGTTACACTGCAAGTTTGGCTTCACTTTTGACTGTTCAAGAACTGAAACCGGCTGTGAATGATATCAATCAACTACAGAAAAATGGAGAGAAAATTGGGCATAAAGTTGGTTCATTTATCCGTGAGATTCTAAAGTCATTGAAGTTCGAAGATTACCAACTAAAAACTTATCGAACTGCAGAAGAAATGCATGATCTTTTATCCAAAGGAAGCGCCAATGGTGGAATTTCTGCTGCCATGGATGAAAACCCTTACATAAAGCCGAATGAAAGCAACAACAAATTTTCAAAAACTAAAAATAAAAACATGAGCTTAAAACAAGGTTTCCCCAAAGGTTCGCCATTAGTACCCGATATCTCGAGAGCAATCTTGGAGGTGACAGAAAGCGATAGAATGAGAGAGATTGAAAACGCATGGTTCAAAAAGGTGAGAGAATGTTCGATATCAGAAGCTTCGCAGTTTTCGTCGACTCGTCTGAGCATCGATAGCTTCTGGGCACTTTTCGTGATCGTGGCATGTGTGTCTACAGTTTCTGTCATCTGTTACGTCCTCAAATTTCTGTACGACGAGCGAGGTGTGTGGTGGAAGGAAAATTGTTCGAATCATGAAAGATTGAGGGAATTAGGTAGAAAATTCATGGACAGAGATGCAAGAGCTGACCCACTGAGAAGAAGGGTATTCATAAATGGCGCTCCTGTTCATCCACAACCTCTAATTATTGGAGATAATCACCCTCCAGCAGAT 2664 42.53 MVLFAMAATAEGDAAAVKVKVGVVLNSDGFGKMGLSCISMALSDFYASRSYYKTRVILKPMDSNGTVVDAAAAALELIKKEEVQAIIGPTSSMQANFMIDIGDKAQVPIISFSATRPSLTSHRSSFFFRVAQDDSSQVKAIGAIVKTFKWRQVVPIYVDNEFGDGIIPYLVDALQEVNAHIPYQSIISPDATDNHITSELYKLMTMQTRVFVVHMLPKLAIQIFIKAKQIGMMKKGYVWIITDGITNSLESINPSTFESMQGVIGIKTYVPRTKRLKSFESDWRKRFLRYYPITEEIPDLDVFGLWAYDAAWALAIAVEKAGTDNLKYSPTNVTTLNYLYNLGVNENGRKLRDEFSKVKFKGLAGEFSVKNGQLESEIFEIVNLIDNGRRNVGFWSSESGMRRELKGGSSGLRRIIWGGDSVAPPKGWEIPTNEKKLRVVVPVKDGFWEFVSVVRDPETNETEVSGYCIDVFKAVIEALPYAVAYELIPFHKSAAEPGGTYNDLVYQIYLGEFDALVGDLTIRANRSKYIDYTLPFAESGVSMVVPIMSTKNTNAWVFIKPLTGRLWSLTGGFFLVIALVVWILEHRLNEDFRGTPWNQFCTSLWYSFSTMVFAHREVTLNHWTRFVVIVWLFVVLIITQSYTASLASLLTVQELKPAVNDINQLQKNGEKIGHKVGSFIREILKSLKFEDYQLKTYRTAEEMHDLLSKGSANGGISAAMDENPYIKPNESNNKFSKTKNKNMSLKQGFPKGSPLVPDISRAILEVTESDRMREIENAWFKKVRECSISEASQFSSTRLSIDSFWALFVIVACVSTVSVICYVLKFLYDERGVWWKENCSNHERLRELGRKFMDRDARADPLRRRVFINGAPVHPQPLIIGDNHPPAD 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21118846 21124250 + Lsi08G012700.1 Lsi08g01270 669196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01270 888 CDD GluR_Plant 435 780 - -
Lsi08g01270 888 Pfam Bacterial extracellular solute-binding proteins, family 3 461 781 IPR001638 -
Lsi08g01270 888 Gene3D - 556 696 - -
Lsi08g01270 888 Pfam Ligand-gated ion channel 782 813 IPR001320 GO:0015276|GO:0016020
Lsi08g01270 888 Pfam Receptor family ligand binding region 37 386 IPR001828 -
Lsi08g01270 888 Gene3D - 135 302 - -
Lsi08g01270 888 PIRSF IGluLR_plant 1 874 IPR017103 -
Lsi08g01270 888 Gene3D - 436 555 - -
Lsi08g01270 888 PANTHER GLUTAMATE RECEPTOR 2.9 19 851 - -
Lsi08g01270 888 Gene3D - 332 435 - -
Lsi08g01270 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 851 - -
Lsi08g01270 888 SUPERFAMILY Periplasmic binding protein-like I 15 402 IPR028082 -
Lsi08g01270 888 SMART GluR_14 436 782 IPR001320 GO:0015276|GO:0016020
Lsi08g01270 888 CDD PBP1_GABAb_receptor_plant 31 405 IPR044440 -
Lsi08g01270 888 SUPERFAMILY Periplasmic binding protein-like II 415 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01270 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101204040 1436.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00559 Lsi-Chr7:5904826 Lsi08g01270 Lsi-Chr8:21118846 0 dispersed
Lsi08g00819 Lsi-Chr8:16538725 Lsi08g01270 Lsi-Chr8:21118846 0 dispersed
Lsi08g01270 Lsi-Chr8:21118846 Lsi08g01273 Lsi-Chr8:21135873 0 dispersed
Lsi08g01272 Lsi-Chr8:21131435 Lsi08g01270 Lsi-Chr8:21118846 3.66E-19 dispersed
Lsi08g01355 Lsi-Chr8:21855480 Lsi08g01270 Lsi-Chr8:21118846 5.25E-134 dispersed
Lsi08g01270 Lsi-Chr8:21118846 Lsi08g01271 Lsi-Chr8:21125508 2.38E-170 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01270 Lsi_Chr08 FPKM 9.206495 10.576075 14.394768 14.098924 15.654956 14.205635 16.149866 17.017586 16.303158 18.599312