Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01271 ATGATTAATGGGCATGAACAGGAGTTTGATGCTGTGGTAGCAGACTTAACAATCCGTGCAAAGAGATCGTTATACATAGATTACACATTACCATTTACAGAATCAGGAGTGGCAATGGTTGTGCCGATGAAGAGTACGAAGAATACTAATGCATGGGTGTTCATAAAGCCTCTAACAGGGCATATGTGGGCACTTACAGGCGGTTTCTTTCTTGTAATGGCACTTGTTGTTTGGATTCTGGAGCATCGAGTCAACGAAGAGTTTCAAGGAAATCCTTGGAATCAGTTATGTACCAGTCTCTGGTACTCTTTCTCCACCATGGTTTTTGCCCATAGGGATGTTACCTTCAACAACTGGACAAGAGTTGTGGTAATAATATGGCTGTTTGTAGTTCTAGTCATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACTGTTCAAGAGCTCAAACCAACAGTAACTGATATCAATCAGCTGCTTAAAAATGGAGAGAACATCGGGTTTCAAGGGGGTTCTTTCGTCTATGAGATTCTCAAGTCCTTGAACTTCAAAGATTTTCAGCTCAAAACTTACGACAGTGTAGAACAAATGCATGAACTTTTCACCAAAGGAAGCATGAATGGCGGAATTTCTGCTGCCTTAGATGAAATCCCTTACATTAACATATTCCTCGCACAGTATTGCTCACAATATACCACCGCTGAACCCACCTACAAAGCCGATGGTTTTGGTTTTGGTTTTCCAATAGGTTCGCCATTAGTACCTGATATCTCGAGAGCAATCTTGCAAGTGACAGAAAGTGATAGAATGAGAGAGATCGAAAATGCATGGTTTCAGAAGACCAAGGACTGTTCTGCTTCGAAAGCTTCCGAGCTTTCTTCCAGTCGACTGAGCCCCGTCAGCTTCTGGGGACTTTTCATGATCACCAGCGTTGTTTCCTTTATTTCTTGCGGCTTTTACATTGGCAAATTTCTCTACGACGAACGATTGTTGTGGCTAAACGTAAATGATCCCATCTGGGCAAGAATTTCTCGCTTGTTTCGAAGGTTTATGGGGATAGACTTGAGAGCTTACCCGTTGCGGAGGAGGAGAATACTCATAGATGACATTCGTGTTCATCGAAGAAACCATAGTTTTTAG 1146 42.15 MINGHEQEFDAVVADLTIRAKRSLYIDYTLPFTESGVAMVVPMKSTKNTNAWVFIKPLTGHMWALTGGFFLVMALVVWILEHRVNEEFQGNPWNQLCTSLWYSFSTMVFAHRDVTFNNWTRVVVIIWLFVVLVITQSYTASLASLLTVQELKPTVTDINQLLKNGENIGFQGGSFVYEILKSLNFKDFQLKTYDSVEQMHELFTKGSMNGGISAALDEIPYINIFLAQYCSQYTTAEPTYKADGFGFGFPIGSPLVPDISRAILQVTESDRMREIENAWFQKTKDCSASKASELSSSRLSPVSFWGLFMITSVVSFISCGFYIGKFLYDERLLWLNVNDPIWARISRLFRRFMGIDLRAYPLRRRRILIDDIRVHRRNHSF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21125508 21128522 - Lsi08G012710.1 Lsi08g01271 669197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01271 381 SUPERFAMILY Periplasmic binding protein-like II 7 281 - -
Lsi08g01271 381 Gene3D - 52 184 - -
Lsi08g01271 381 Gene3D - 226 288 - -
Lsi08g01271 381 SMART GluR_14 1 282 IPR001320 GO:0015276|GO:0016020
Lsi08g01271 381 Gene3D - 3 51 - -
Lsi08g01271 381 PANTHER GLUTAMATE RECEPTOR 2.9 7 356 - -
Lsi08g01271 381 Pfam Ligand-gated ion channel 282 313 IPR001320 GO:0015276|GO:0016020
Lsi08g01271 381 Pfam Bacterial extracellular solute-binding proteins, family 3 7 281 IPR001638 -
Lsi08g01271 381 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 356 - -
Lsi08g01271 381 CDD GluR_Plant 5 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01271 Lsi-Chr8:21125508 Lsi08g01273 Lsi-Chr8:21135873 4.39E-175 dispersed
Lsi08g01270 Lsi-Chr8:21118846 Lsi08g01271 Lsi-Chr8:21125508 2.38E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01271 K05387 - csv:101203305 593.578