Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01273 ATGGAGAAAAAGAAGGGTTTGAGAGGTGGTTACAGGGTGTTGATGATCGTTCTCCTTCTTAACATATTACTGGCCATGGCGGCGCAGGAGGAGAAGGAGGAGGAGGCGGCGGCGGCAGTGAAAGTGAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTTAATTTTACTTTTGGGAAGATGGGACTGAGTTGTATTTCAATGGCTCTTGCTGATTTCTATTCTTCTCGGAGTCATTACAAGACAAGAGTGATTCTCAACACCATTGACTCCAATCACACAGTTGTTGGTGCATCTGCCGCAGGCCCAACAAGTTCGATGCAAGCGAGTTTCATGATCGACGTTGGAGACAAAGCACAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCCCATCGCAGTTCTTTCTTCTTTCGAATTGCCCAAGCTGATTCCGCTCAAGTGAAAGCCATTGCAGCCATCATCAAGGCCTTCAAATGGCGACAAGTTGTCCCAATCTACGTCGACAACGAGTTCGGCGACGGTATCATCCCTTACCTTGTCGGTGCTCTACAAGACGTAAATGCAAACGTGCCGTACCAAAGCCTCATCTCTCCTACCGCCACCGACGACGACATTGACCTCAAACTTTCCAATTTAATGACAATGCAAACTAGAGTGTTTGTAGTGCACATGTTACCTGACCTTGCTTCAAGACTCTTCACCATTGCGAGAAAGAAGGGAATGATGGGTCGAGGCTACGTTGGGATAATGACGGATTCTATTACAAATGAGTTCCATTCAATAGAACCCTCAACTCTTGATCAATCAATGCAAGGAGTTTTGGGAATAAGAACTTACGTCCCAAGAATCAAACGCCTTGAAACCTTCAAACGTAGTTGGCAGAGGAGATTTCTAACCTACTATCCAACCATAGAGCAAATTCCTGACCTCAATGTGTTTGGGTTATGGGCTTACGATGCGGCTTGGGCACTGGCCATCGCCGTTGAGAAGGCCGGCACCGACAATCTTCGATATAGCAAGCTCGATAATAATGTTACTCTTACCACAATGAAAATGAATCATTCATCAAACTATCTCTACAACCTCGGCGTCAATCAAAATGGTGCGAAGCTACGAGATGCATTGTCAAACGTTAGGTTTAGAGGGTTAGCTGGTGAGTTCAGTCTCATCGATGGTCAATTACAATCGTTCGTTTTCGAGATAGTGAATGTGGTGGGGGATTTAGAGAATCCGCCAAAAGGATGGGAGATTCCAACGAGTGGGAAGAAGTTAAGAGTTGGGGTTCCAGTGAAGGATGGATTTTGGGAGTTTGTGAATGTGGTTCGTGATCCAAAAACAAACGCAACGGAAGTGAGTGGATATTGTATAGATGTATTCAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTACTTATGAGTTCATTCCTAACGACAAATCTAATGCACATCCTGGTGGTAGCTATAATGACTTGACTCATCAGCTCTTCCTTGGGAAGTTTGATGCTGTGGTGGGTGACATAACGATCAGAGCAAATAGGTCTTCATATATAGACTACACATTGCCATTCACAGAATCAGGCGTGGCCATGGTGGTTCCGATGAAGAGTAGCAAGAACACCAACGCCTGGGTATTCTTAAAGCCTCTTACTTGGAAGTTATGGGTCGTTACAGGCTGCTCCTTCGTGTTCGTCGCAATTGTTGTTTGGATACTTGAACATCGAATCAACGAAGACTTCAATGGTCTTGTTTTCGATCAGATTTGTACCAGCCTTTGGTATTCTTTTTCCACCATGGTTTTTGCCCATCGGGAGCGTACATTGAACAACGGGACGAAACTTGTGGTGATAATATGGCTGTTTGTGGTTCTGATAATAACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAACTGAAACCAAGCGTAAATGATATCAATCAAATTCTTAAAAATGGAGAGAACATTGGGTATCAAGGAGGTTCTTTTGTGTACGAGATTCTTAAGTCCTTGAAGTTCCAAGATTCCCAACTCAAAACATACCAATCTCCAGAAGAAATGCACCAACTTTTCACTAAAGCAACTTTCAATGGCGGAATTTCTGCTGCAGTCGATGAAATCCCTTATATTAAGTTGTTTCTTGCCAAGTATTGCTCCCAATATACCACTACTGAACCCACCTACAAAGCCGATGGATTTGGTTTTGGTTTTCCGATAGGGTCGCCGTTAGTACCTGATATATCGAGGGCGATTTTGAAGGTAACAGAGGGCGATAGAATAAGAGAGATCGAAAACGCATGGTTCAAAAAGGTGAGAGAATGCTCAACGTCCGAAGCCGCTGAGTTGTCTTCCACCCGCCTCAACGTCGACAGTTTTTGGCTACTTTTTGCCTTCACCGTCTTTGTTTCCGTTGTCTCTGTCGCCATTTACATTGGCATTTTTCTCTACGAAGAACTGCCGCAGTGTTGGAGAGCAAATCCTTCCATCACGGCTACATTAGCCGACTTGGGTTCCAAGTTCTTGAAGAGGCGTGGAATCCGATTCTTGGCCAATGGAGTTTACAACCCCGTAGACCTCTACTTCAGCGTGAATTGGAATCCTGGTCTGTTTTATCCTCACCCTGGAACCAACCTACAAATGCCATCGCTGTTGATCTTATCGCATGGAAGTTATCTTCAAATGGGCACTTCAGTGTTAAGTCACTAA 2730 44.43 MEKKKGLRGGYRVLMIVLLLNILLAMAAQEEKEEEAAAAVKVKVKVKVGVVLDFNFTFGKMGLSCISMALADFYSSRSHYKTRVILNTIDSNHTVVGASAAGPTSSMQASFMIDVGDKAQVPIISFSATRPSLTSHRSSFFFRIAQADSAQVKAIAAIIKAFKWRQVVPIYVDNEFGDGIIPYLVGALQDVNANVPYQSLISPTATDDDIDLKLSNLMTMQTRVFVVHMLPDLASRLFTIARKKGMMGRGYVGIMTDSITNEFHSIEPSTLDQSMQGVLGIRTYVPRIKRLETFKRSWQRRFLTYYPTIEQIPDLNVFGLWAYDAAWALAIAVEKAGTDNLRYSKLDNNVTLTTMKMNHSSNYLYNLGVNQNGAKLRDALSNVRFRGLAGEFSLIDGQLQSFVFEIVNVVGDLENPPKGWEIPTSGKKLRVGVPVKDGFWEFVNVVRDPKTNATEVSGYCIDVFKAVIEALPYAVTYEFIPNDKSNAHPGGSYNDLTHQLFLGKFDAVVGDITIRANRSSYIDYTLPFTESGVAMVVPMKSSKNTNAWVFLKPLTWKLWVVTGCSFVFVAIVVWILEHRINEDFNGLVFDQICTSLWYSFSTMVFAHRERTLNNGTKLVVIIWLFVVLIITQSYTASLASLLTVQELKPSVNDINQILKNGENIGYQGGSFVYEILKSLKFQDSQLKTYQSPEEMHQLFTKATFNGGISAAVDEIPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPIGSPLVPDISRAILKVTEGDRIREIENAWFKKVRECSTSEAAELSSTRLNVDSFWLLFAFTVFVSVVSVAIYIGIFLYEELPQCWRANPSITATLADLGSKFLKRRGIRFLANGVYNPVDLYFSVNWNPGLFYPHPGTNLQMPSLLILSHGSYLQMGTSVLSH 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21135873 21143206 - Lsi08G012730.1 Lsi08g01273 669199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01273 909 Pfam Ligand-gated ion channel 778 808 IPR001320 GO:0015276|GO:0016020
Lsi08g01273 909 SMART GluR_14 428 778 IPR001320 GO:0015276|GO:0016020
Lsi08g01273 909 Pfam Receptor family ligand binding region 99 411 IPR001828 -
Lsi08g01273 909 SUPERFAMILY Periplasmic binding protein-like II 416 777 - -
Lsi08g01273 909 CDD GluR_Plant 427 776 - -
Lsi08g01273 909 PIRSF IGluLR_plant 10 416 IPR017103 -
Lsi08g01273 909 PIRSF IGluLR_plant 411 852 IPR017103 -
Lsi08g01273 909 Gene3D - 548 689 - -
Lsi08g01273 909 PANTHER GLUTAMATE RECEPTOR 2.9 412 835 - -
Lsi08g01273 909 PANTHER GLUTAMATE RECEPTOR 2.9 46 413 - -
Lsi08g01273 909 CDD PBP1_GABAb_receptor_plant 52 412 IPR044440 -
Lsi08g01273 909 Gene3D - 149 317 - -
Lsi08g01273 909 Gene3D - 412 547 - -
Lsi08g01273 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 412 835 - -
Lsi08g01273 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 413 - -
Lsi08g01273 909 Gene3D - 718 784 - -
Lsi08g01273 909 SUPERFAMILY Periplasmic binding protein-like I 46 412 IPR028082 -
Lsi08g01273 909 Pfam Bacterial extracellular solute-binding proteins, family 3 453 777 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01273 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203550 1299.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01270 Lsi-Chr8:21118846 Lsi08g01273 Lsi-Chr8:21135873 0 dispersed
Lsi08g01271 Lsi-Chr8:21125508 Lsi08g01273 Lsi-Chr8:21135873 4.39E-175 dispersed
Lsi08g01273 Lsi-Chr8:21135873 Lsi10g00140 Lsi-Chr10:2214247 2.47E-136 dispersed
Lsi08g01273 Lsi-Chr8:21135873 Lsi08g01275 Lsi-Chr8:21148173 1.34E-164 proximal
Lsi08g01272 Lsi-Chr8:21131435 Lsi08g01273 Lsi-Chr8:21135873 4.58E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01273 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01273 Lsi_Chr08 FPKM 1.499391 1.793905 7.981044 10.245532 10.156533 8.055999 6.888578 0.80201 0.669396 0.63302