Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01275 ATGGCCGAGGAGCTAATACAGAAAATCGAAGTGGAAGCAATCTTGGGGCCAGAAAAATGGGGAGAAGCATATTTCATTAGTAAGTTGGGTGAGAAAGCTGAAGTTCCCATAATCTCATTTGCACCAACAACAACAACAACCTCCACTCTCTCTTATTCCTTTCAAGTAGCCCAAACTCATTCCTTCCAAGTTGAAGCCATTAGCCACATCATCACAACCTTCAAGTGGAAACATGTGGTTATCATTTACAATCATCAAGATGACGATATTGGAATATGGTTTGCCGCTGATTTGACCAACGCTTTGCAAGACTCATACGTCCACGTTCATAAAACTCTCTTAGACTCAACCATTTCAACTAATCATATCAAACAAAAGCTTTACAGACTTACGTTGAGACAAGCAAGAGTTTTTGTGGTCCATTTGGATCCCAATCTAGCATCTCGTGTTTTCGCCATGGCCCACCAACTTGGAATGATGAGCCAAGGCTATGTTTGGATTGTTACATCCGCCACAGCCAATGTCTTAAACTCTTTGAATGCTTCAACTCTTTATACAATGCAAGGAGTTTTGGGAGTAAAGACGTACGTTCCAACAACATTGGAGCTCCACAATTTCACCACTCGATGGAGAAGGAAATTCCAATTAGAAATAGATGTTAATGGATTGTGGGCTTACGATGCTGCTTGGGCATTAGCCATGGCGGTTGAGAGAATTGGAAGCACTCATCCCAATTTCACTTCTGGGGTATCTGGAAATGGGAAGAAAATCAGGGAGTCATTGTTAAACACAAAATTCAAAGGACTTAGTGGGGAGGTTAATCTAGTTAATAAAGGGCGATTAAAGTGGGGGAATTTGGAGATAGTGAATGTATTAGGAAGTGGAGAAAAACCGGTGGGATATTGGAGGCCGGAAATGGGTCTGACCGGAGAAATGAACCGGAAAAGTAATTTAAAAGACATTATATGGCCGGGATACTCGGTTAAAGTTCCTAAAGGATGGGGAAGGAGTAATGAGAGTAATGCAAAGAAAAGAGTGAAGGTTGGAGTTGCAATGAATGATGAATTTAGTGAATTTGCTCGACAAATTGGGAACAGCACCAAAATGAACAGAACCAAAATGGTGGGATACTGCATAGATATCTTTGAAGCAGTGGTCAGAGAGCTTCCTTATGATCTTTTATATGATTATGTTCCATTTGTAGATCCTCTGCATGGACGCGAGTCGGCTTCCTACGATCACTTGATCATGCAAGTGTTCAAAGAGGAATATGATGTTGCAATTGGAGACATAACAATATTAGAAAACAGATCTTTATACGTGGAGTTCACTTTGCCATTCACCGAAGCTGGAATTGGTATGGTCATTCCTGTTAAGCGTAGCTTGAAAAGCCATAAATGGGTGTTCTTGAAACCCTTGAATTTGAAACTCTGGATTACAAGCTTTTTCTTCTTCATTTTCATGGGATTCGTTGTTTGGATTCTTGAACACCGAAACCATCAACACTTTCAAATCCCTCCATTTCACAACATTGGCTCTGGGGAGACATTGGCGAGTAATCTGTCGAGGTTCGTGGTGGTGATATGGTTATTCGTGGTGTTCATCCTAACTCAGAGCTACACGGCGAGTTTAACGTCGTGGTTAACAGTGCAACAACTCCAACCAGTCCCTGACATTAATTATATAATACAAAATGATTGGCGCGTTGGATATCAAAACGGCTCTTATGTTTTGCAAACACTCAAGGCTATGGGCATTAAAAATTTGAGTCCTTATTATTCATTCGACAACCTGTATTGTCAGTTAACAAATGGAAGCTGCAATGGCCGTATCGATGCCGTCATTGACGAGATCCCTTACATGCAGCTCTTTCTTTCAAAATATCCTCATGATCTTGTGATGGCTGATTCTCTATTCAAGGCCAACGGTTTTGGATTTGCATTCCCATTAGGTTCATCTATAGTAGAAGATATGTCAAAGGCAGTGTTAAAAGTGACAGAGGGTGATAAATTGAGCAGCATAAGAGCGAAATGGTTTCAAAAGAAAATTTGCTCTCAATCTTGCAGCTCAAATGACGACTCTTCGTCAAGCCAGCTCGACCTGAGTTACTTTGGGACCTTATTCCTCATTGCAGCTTCTGCGGCCATCTTCGCTCTCGTCCTCTATTTCTTCATTTCTCTATATAAACGACGACGCTCGCTCCGGCGCACCCTCTCCAACGACAGCACCATGTGGAAAAGAATTTCTCTCCATCTTTTCAAATCGAAAAATGATGATGTCGAATGTCGTCGAGAGGGCGGAATTGATTTTGAAATATCGGTGGTCGATGCCCCCTCCCCTCCCCATCCTTCTGATGACTCTATTATCCACTCCTCCGAGGGCTTGAACGAGTTTGAAGATCAAACTACACATGACTGA 2418 41.81 MAEELIQKIEVEAILGPEKWGEAYFISKLGEKAEVPIISFAPTTTTTSTLSYSFQVAQTHSFQVEAISHIITTFKWKHVVIIYNHQDDDIGIWFAADLTNALQDSYVHVHKTLLDSTISTNHIKQKLYRLTLRQARVFVVHLDPNLASRVFAMAHQLGMMSQGYVWIVTSATANVLNSLNASTLYTMQGVLGVKTYVPTTLELHNFTTRWRRKFQLEIDVNGLWAYDAAWALAMAVERIGSTHPNFTSGVSGNGKKIRESLLNTKFKGLSGEVNLVNKGRLKWGNLEIVNVLGSGEKPVGYWRPEMGLTGEMNRKSNLKDIIWPGYSVKVPKGWGRSNESNAKKRVKVGVAMNDEFSEFARQIGNSTKMNRTKMVGYCIDIFEAVVRELPYDLLYDYVPFVDPLHGRESASYDHLIMQVFKEEYDVAIGDITILENRSLYVEFTLPFTEAGIGMVIPVKRSLKSHKWVFLKPLNLKLWITSFFFFIFMGFVVWILEHRNHQHFQIPPFHNIGSGETLASNLSRFVVVIWLFVVFILTQSYTASLTSWLTVQQLQPVPDINYIIQNDWRVGYQNGSYVLQTLKAMGIKNLSPYYSFDNLYCQLTNGSCNGRIDAVIDEIPYMQLFLSKYPHDLVMADSLFKANGFGFAFPLGSSIVEDMSKAVLKVTEGDKLSSIRAKWFQKKICSQSCSSNDDSSSSQLDLSYFGTLFLIAASAAIFALVLYFFISLYKRRRSLRRTLSNDSTMWKRISLHLFKSKNDDVECRREGGIDFEISVVDAPSPPHPSDDSIIHSSEGLNEFEDQTTHD 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21148173 21154949 - Lsi08G012750.1 Lsi08g01275 669201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01275 805 MobiDBLite consensus disorder prediction 775 805 - -
Lsi08g01275 805 SMART GluR_14 345 681 IPR001320 GO:0015276|GO:0016020
Lsi08g01275 805 Gene3D - 508 570 - -
Lsi08g01275 805 Gene3D - 571 685 - -
Lsi08g01275 805 Gene3D - 61 226 - -
Lsi08g01275 805 Pfam Receptor family ligand binding region 2 291 IPR001828 -
Lsi08g01275 805 Gene3D - 227 342 - -
Lsi08g01275 805 Gene3D - 343 483 - -
Lsi08g01275 805 CDD GluR_Plant 344 679 - -
Lsi08g01275 805 PIRSF IGluLR_plant 1 801 IPR017103 -
Lsi08g01275 805 PANTHER GLUTAMATE RECEPTOR 2.9 4 749 - -
Lsi08g01275 805 SUPERFAMILY Periplasmic binding protein-like II 323 683 - -
Lsi08g01275 805 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 749 - -
Lsi08g01275 805 Pfam Ligand-gated ion channel 681 713 IPR001320 GO:0015276|GO:0016020
Lsi08g01275 805 Pfam Bacterial extracellular solute-binding proteins, family 3 371 680 IPR001638 -
Lsi08g01275 805 SUPERFAMILY Periplasmic binding protein-like I 2 334 IPR028082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01275 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101205977 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01275 Lsi-Chr8:21148173 Lsi08g01355 Lsi-Chr8:21855480 0 dispersed
Lsi08g01273 Lsi-Chr8:21135873 Lsi08g01275 Lsi-Chr8:21148173 1.34E-164 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01275 . Chy03g01058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01275 Lsi_Chr08 FPKM 24.734554 26.917603 17.446381 16.135799 22.250694 23.409662 23.325394 12.604267 13.428693 14.196047