Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01277 ATGGAGGAAGCCGGTCCCAAACCCAAGAAGGGCGTCTCTTCCCTTTGCTGCTTATGCAACAACAGGAAAGCTGCTCTCAAGAGGCCCAAAACCCTCCAACAGGTTTTTGAGGAGGAGATCCATCAAGTCATTGTGAAGAATCAGTTGTTTAGACCTGGGGAACGCATTGCTGTTGGTGCATCTGGTGGAAAAGATTCTACCGTTCTTGCTTATGTGTTATCAGAATTGAATCGGCGGCACAATTATGGTTTAGATCTCTTTCTCTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGATGAAAAAAAAAACAATTATCTATGAGTGGAACCCCCAACCCCCTTCCTCTGGTGGTAATGAATCACTCAGTTTTCGTTTTTCTGAGATTCTCTCTATGAGTTGTAATATTTACGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGTTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGACAGGAAAGGGTTATTACAAACCATTCGTTCCACTTTATTTCTAAAAGTAGTTGTTATCTTATACGAACCTCTTCAACATTGGGAAAAGGGAGCTTCTGCCATGGGTACAGGTGGCATTGTAATGCTGAGCAGTGTGGGGCTGCTCTTGAGTCGAGCACTTGCATATCTTCTACTCTCTTTGTTGTTTTTCACCATTATTCTGTGATGGAGTTTTTTCTCCTGAAGGCTCTTGATAGAGGTTCTGCACTGTTGAAAGTAGATAAGCTTGCCACGGGGCACAATGCAGATGACATGGCTGAAACAGTTCTATTAAATATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTGCAATAATAACAGGTGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAATGTTCACGTATGCTTATTTTAAGAAGCTGGACTACTTCTCCACCGAGTGCATTTATTCTCCAAATGCTTATCGTGGTTTTGCTCGCGAATTTATCAAGGATTTGGAAAGAATCAGGTTTCAATTCACCTTACCTAGGGCCATTCTTGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACTTCAACAAAAATGCCTGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGGTAATTCAGTTGTTTGTAGATTGTATAGTTCCACTAGATCTTGAAAAGTGGTGTAAAGCTTGTGTTCTGCTCGAGGGCCTAAACCGAGGTTTGCCAAAGTTGGGTATTGGGCGCAGTCGAGGGCTCGATGGCGAGGGGAAGAGGGAAACAAATGGAAGTACATTCAACATAACTGATTTGACAACAACAATACAAACAGTGAAGTCCATTGGGAAACTATAG 1455 41.31 MEEAGPKPKKGVSSLCCLCNNRKAALKRPKTLQQVFEEEIHQVIVKNQLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQMKKKTIIYEWNPQPPSSGGNESLSFRFSEILSMSCNIYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQERVITNHSFHFISKSSCYLIRTSSTLGKGSFCHGYRWHCNAEQCGAALESSTCISSTLFVVFHHYSVMEFFLLKALDRGSALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIMFTYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRFQFTLPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQVIQLFVDCIVPLDLEKWCKACVLLEGLNRGLPKLGIGRSRGLDGEGKRETNGSTFNITDLTTTIQTVKSIGKL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21160483 21165081 + Lsi08G012770.1 Lsi08g01277 669203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01277 484 CDD Alpha_ANH_like_II 55 353 - -
Lsi08g01277 484 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 15 120 IPR000541 GO:0000049|GO:0002098|GO:0034227
Lsi08g01277 484 Gene3D HUPs 15 201 IPR014729 -
Lsi08g01277 484 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 147 460 IPR000541 GO:0000049|GO:0002098|GO:0034227
Lsi08g01277 484 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 15 120 - -
Lsi08g01277 484 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 147 460 - -
Lsi08g01277 484 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 264 371 - -
Lsi08g01277 484 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 189 - -
Lsi08g01277 484 Gene3D HUPs 253 451 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01277 K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-] - ath:AT1G76170 375.555
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013567 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01277 Lsi_Chr08 FPKM 8.822369 9.484856 1.731595 1.894811 2.01557 1.849321 1.555353 0.149337 0.0 0.0