Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01278 ATGGCGATTGCTTTAATGGGATTCTCTATTCCACCTCTCTTCTACCTCTGCATTTCCTTCTTCACCATTGTTTGCGCCGACGATCCTTACAGATTCTTCGATTGGAATGTCACTTACGGCACCATTTATCCCCTCGGCGTCCCCCAGCAGGGCATTCTGATTAATGGCCAATTTCCCGGCCCCGATATTCACTCTGTTACCAATGATAATATCATTATCAATGTCTTTAATAGCTTGGATGAGCCTTTTCTACTCTCCTGGAATGGGATTCAACAGAGAAGGAACTCATACGAAGACGGTGTGTACGGAACAACATGTCCAATTCCTCCAGGGAAGAACTTCACTTACATTCTTCAAATGAAAGATCAGATCGGAAGCTTCTATTACTTTCCTTCTCTTGGCTTCCATAAGGCCGCCGGTGGTTTTGGTGGGATCAGAATTCTCAGCCGCCCCCGGATTCCTGTTCCGTTCCCGGATCCTGCCGGTGATTACACTGTCCTCATCGGTGATTGGTACCAAGCTAATCATACGACGTTGAGGGGCCAATTAGATAATGGCTCAATGCTCCCACTCCCCGACGGAATCCTCATCAATGGTCGTGGGCCCAATAGAACTGCCTCTTTGAACGTGGAACAAGGAAAAACTTACAGGCTGAGGATATCAAACGTGGGGCTCCAAAGCTCTCTCAACTTTCGTATTCAAGGGCACAGGTTGAAGGTGGTGGAAGTTGAAGGAACCCATACCCTCCAAACGGAATTCTCTTCCCTTGACATTCACGTCGGCCAATCTTATTCCGTTCTTGTCACAGCGGATCAGCCCGCTCAGGACTTTTACATTGTAGTTTCTTCTCGCTTTACTACTCCCATCCTCACCACCACCGCTATTCTCCGTTATGCCAACTCCGCCGGCTCCGTCCAAGGCCCGCCTCCTGGTGGCCCAACTATCCAAATTGATTGGTCCCTTAACCAAGCTCGAGCCATCAGAACCAATCTTACAGCCAGTGGGCCTCGACCGAACCCACAAGGGTCTTATCACTATGGTCTGATCAACACGACCAGAACCATTGTACTGTCGAACTCAGCCGGGCTTGTGAATGGGAAGCAAAGATACGCCGTGAACAGCGTGTCATTTATCCCGGCAGATACTCCTCTGAAGGTGGCGGACTTCTTCAAAATAGGAGGAGTTTTCCGGGTGGGAAGCATTTCCGACTGGCCAAACGGCGGAGGAATCTACCAAGACACCTCTGTTATGGGCGCTGATTACAGAGCTTTCGTCGAAATCGTTTTCCAGAACAACGAAGACCTCATCCAGAGCTGGCATCTCGATGGCTACTCCTTCTTCGTTGTTGGCATGGATGGAGGGCAATGGACATCGAATAGCAGAAACCAATACAATCTACGAGATGCAATTGCTCGTTGTACCACTCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTAGACAACGTAGGAATGTGGAATGTAAGGTCAGAATTCTGGGCAAGGCAATACTTGGGACAACAATTTTACTTGAGAGTTTACACTCCATCGACATCGTTGAGAGATGAATATCCAATTCCAAAGAATGCTCTGCTTTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAA 1641 48.63 MAIALMGFSIPPLFYLCISFFTIVCADDPYRFFDWNVTYGTIYPLGVPQQGILINGQFPGPDIHSVTNDNIIINVFNSLDEPFLLSWNGIQQRRNSYEDGVYGTTCPIPPGKNFTYILQMKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYQANHTTLRGQLDNGSMLPLPDGILINGRGPNRTASLNVEQGKTYRLRISNVGLQSSLNFRIQGHRLKVVEVEGTHTLQTEFSSLDIHVGQSYSVLVTADQPAQDFYIVVSSRFTTPILTTTAILRYANSAGSVQGPPPGGPTIQIDWSLNQARAIRTNLTASGPRPNPQGSYHYGLINTTRTIVLSNSAGLVNGKQRYAVNSVSFIPADTPLKVADFFKIGGVFRVGSISDWPNGGGIYQDTSVMGADYRAFVEIVFQNNEDLIQSWHLDGYSFFVVGMDGGQWTSNSRNQYNLRDAIARCTTQVYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYTPSTSLRDEYPIPKNALLCGRATGRRTRPL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21170858 21176594 + Lsi08G012780.1 Lsi08g01278 669204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01278 546 Gene3D - 347 542 IPR008972 -
Lsi08g01278 546 SUPERFAMILY Cupredoxins 348 537 IPR008972 -
Lsi08g01278 546 SUPERFAMILY Cupredoxins 157 338 IPR008972 -
Lsi08g01278 546 Pfam Multicopper oxidase 163 300 IPR001117 -
Lsi08g01278 546 CDD CuRO_1_AAO_like_1 32 147 IPR034273 GO:0005507
Lsi08g01278 546 Pfam Multicopper oxidase 383 518 IPR011706 GO:0005507|GO:0016491
Lsi08g01278 546 PANTHER OSJNBA0084K11.18 PROTEIN 17 539 - -
Lsi08g01278 546 Pfam Multicopper oxidase 36 150 IPR011707 GO:0005507
Lsi08g01278 546 CDD CuRO_3_AAO_like_1 379 500 IPR034275 GO:0005507
Lsi08g01278 546 PANTHER MULTI-COPPER OXIDASE 17 539 IPR045087 -
Lsi08g01278 546 Gene3D - 161 337 IPR008972 -
Lsi08g01278 546 SUPERFAMILY Cupredoxins 23 177 IPR008972 -
Lsi08g01278 546 Gene3D - 30 151 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01278 - - - csv:101212563 1057.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01790 Lsi08g01278 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01002 Lsi-Chr1:8279779 Lsi08g01278 Lsi-Chr8:21170858 0 dispersed
Lsi04g01790 Lsi-Chr4:25115366 Lsi08g01278 Lsi-Chr8:21170858 0 dispersed
Lsi08g01278 Lsi-Chr8:21170858 Lsi10g00908 Lsi-Chr10:13550142 0 dispersed
Lsi02g00001 Lsi-Chr2:3449 Lsi08g01278 Lsi-Chr8:21170858 0 transposed
Lsi02g00590 Lsi-Chr2:5260717 Lsi08g01278 Lsi-Chr8:21170858 0 transposed
Lsi11g01447 Lsi-Chr11:22986606 Lsi08g01278 Lsi-Chr8:21170858 0 transposed
Lsi11g01243 Lsi-Chr11:21063432 Lsi08g01278 Lsi-Chr8:21170858 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01278 Lsi_Chr08 FPKM 0.0 0.291088 2.163958 1.694026 0.489503 0.944336 0.999786 12.098056 11.643927 10.199433