Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01280 | ATGGGCCGGCCCAATAATTGTACTTGGGCTAAAAGTAGAGTGGACCAAAGGTGGCCCAGCCCAATAACAAATGGCAAAATCTCGAATTGGCTGCGCCGCGCCTCATTTGGAATCGAAGCGGAGTTGATGAATCTTCCTCTTCTTCTTCCTCAGCATCGCGCCTTCTTCAATTTGCTCTTGCGGTATACCCATCAGAAAGATCTTCAGAAGGGCAAAGCCATTCACGCTCAACTCCTCAGAACTGGTTCATTCTCTTCAGTTTACCTCACCAACAGTCTTGTTAACTTGTATGCAAAATGCGGAAGCCTTGTGAAGGCCAAGCGCGTCTTCGAGAGTATAACCAACAAAGACGTCGTCTCGTGGAATTGCCTCATCAATGGCTACTCTCAACAGGGTCCCGTTGGATCTTCTTTTGTGATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACTCTGCCCAATGCCCATACTTTTGCTGGGGTTTTCACTGCTGCTTCAAGTTCACTCGAAACTTTAGGTGGTCTACAGGCCCATGCGCTTGCGATCAAGACTTCTAGCTTTTATGATGTTTTTGTTGGCAGTTCGCTTCTTAATATGTATTGCAAAATTGGGTGTCTGCTGGATGCTCGTAAAGTGTTCGACAGAATTCCCGAGAGGAATTCTGTTTCTTGGGCGACTATGATTTCAGGGTATGCAATGGAAAGGATGGCTCCTGAGGCTTGGGAGCTGTTTTTATTGATGCGTCGTGAAGAGGGGATCCATAATGAGTTTATCTATACCGGTGTGCTTAGTGCACTGACGGTTCCTGAACTCGTTCACTATGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGGTTGTTATCAATTGTTTCTGTAGGGAACGCTCTTGTTACGATGTATGGTAAATGTGGTTGTTTAGATGATGCGCTTAAAACATTTGAATTGTCTGGCGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGCTATGCTCAAGCTGGGGACTCGCACGAGGCTTTAAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACATTGGTGCTCTGAAAAAGGGGAAACAAATGCATGGATACTCCTTAAAGATGGGATATGAATCCCAGATATATATCATGACAGCATTGGTTGATATGTATGCAAAATGTGGAAGCCTAGTTGATGCCCGAAAGGGGTTTGATTATTTTAAGGAACCGGATATTGTTTTGTGGACTTCCATGATTGGTGGATATGCTCAAAATGGTGAAAATGAAACTGCTCTGACTCTATATTGTAGAATGCAGATGGAAGGGATTCTGCCCAATGAGCTAACTATGGCTAGTGTCTTGAGAGCATGTTCAGGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGGACGATTAAGTATGGATTCAATCTTGCAGTTCCAATAGGGAGTGCTCTTTCTACCATGTATGCAAAATGTGGTAGTTTAGAAGACGGGAACCTGGTATTTAGGAGGATGCCTACTCGAGATATTGTGTCATGGAATGCGATGATATCAGGTCTTTCTCAAAATGGAGAGGGTTTTAAAGCTCTTGAGCTCTTTGAAGAGATGCGGCAAGGCACTACAAAACCCGACTATGTCACTTTTGTGAACGTTCTTTCTGCGTGCAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTCAAGATGATGCTTGATGAGTTTGGCATTGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGATATTCTGAGTCGTGCAGGTAAGCTACAGGAAGCCAAAGAGTTCATAGAATCTGCCACTATCGATCACGGTATGTATTTATGGCGCATCTTGTTAGGAGCCTGTCGAAACTATCGTAATTATGAATTGGGAGCATATGCAGGCGAGAAACTAATTGAGTTAGGTTCAGAAGAATCATCTGCTTATGTATTATTGTCTAGTATTTATGCTGCACTGGAAAGGTCTGATGATGTCGAACGGGTGAGAAGGGTGATGAAACTTCGAGGGGTGAATAAGGATCCAGGTTGTAGTTGGATTGAATTGAAAAGTCAGGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCACAGATTGTCAACATACGTTCAGAGTTAAGAAAGTTGGGAAAACATATGAAGGATGAATGCTATGAATCTCCCGATGATACAGATTCTATGACACTATAA | 2253 | 43.05 | MGRPNNCTWAKSRVDQRWPSPITNGKISNWLRRASFGIEAELMNLPLLLPQHRAFFNLLLRYTHQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSLVKAKRVFESITNKDVVSWNCLINGYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGVFTAASSSLETLGGLQAHALAIKTSSFYDVFVGSSLLNMYCKIGCLLDARKVFDRIPERNSVSWATMISGYAMERMAPEAWELFLLMRREEGIHNEFIYTGVLSALTVPELVHYGKQIHCLALKNGLLSIVSVGNALVTMYGKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGDSHEALKLFSYMHFNGNKPSEFTFVGVINACSDIGALKKGKQMHGYSLKMGYESQIYIMTALVDMYAKCGSLVDARKGFDYFKEPDIVLWTSMIGGYAQNGENETALTLYCRMQMEGILPNELTMASVLRACSGLAALEQGKQIHARTIKYGFNLAVPIGSALSTMYAKCGSLEDGNLVFRRMPTRDIVSWNAMISGLSQNGEGFKALELFEEMRQGTTKPDYVTFVNVLSACSHMGLVERGKVYFKMMLDEFGIVPRVEHYACMVDILSRAGKLQEAKEFIESATIDHGMYLWRILLGACRNYRNYELGAYAGEKLIELGSEESSAYVLLSSIYAALERSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIVNIRSELRKLGKHMKDECYESPDDTDSMTL | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21203936 | 21209148 | + | Lsi08G012800.1 | Lsi08g01280 | 669206 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01280 | 750 | Pfam | PPR repeat family | 523 | 570 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat family | 320 | 367 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat family | 421 | 468 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | E motif | 640 | 702 | IPR046848 | - | |
| Lsi08g01280 | 750 | PANTHER | - | 52 | 348 | - | - | |
| Lsi08g01280 | 750 | PANTHER | - | 272 | 376 | - | - | |
| Lsi08g01280 | 750 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 117 | 153 | IPR002885 | - | |
| Lsi08g01280 | 750 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 220 | 250 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat | 295 | 315 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat | 91 | 116 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat | 222 | 250 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat | 194 | 220 | IPR002885 | - | |
| Lsi08g01280 | 750 | Pfam | PPR repeat | 119 | 146 | IPR002885 | - | |
| Lsi08g01280 | 750 | Gene3D | Tetratricopeptide repeat domain | 174 | 271 | IPR011990 | GO:0005515 | |
| Lsi08g01280 | 750 | TIGRFAM | PPR: pentatricopeptide repeat domain | 525 | 552 | IPR002885 | - | |
| Lsi08g01280 | 750 | TIGRFAM | PPR: pentatricopeptide repeat domain | 222 | 252 | IPR002885 | - | |
| Lsi08g01280 | 750 | TIGRFAM | PPR: pentatricopeptide repeat domain | 323 | 356 | IPR002885 | - | |
| Lsi08g01280 | 750 | TIGRFAM | PPR: pentatricopeptide repeat domain | 424 | 458 | IPR002885 | - | |
| Lsi08g01280 | 750 | Gene3D | Tetratricopeptide repeat domain | 377 | 476 | IPR011990 | GO:0005515 | |
| Lsi08g01280 | 750 | Gene3D | Tetratricopeptide repeat domain | 44 | 173 | IPR011990 | GO:0005515 | |
| Lsi08g01280 | 750 | Gene3D | Tetratricopeptide repeat domain | 272 | 376 | IPR011990 | GO:0005515 | |
| Lsi08g01280 | 750 | PANTHER | - | 339 | 469 | - | - | |
| Lsi08g01280 | 750 | PANTHER | - | 442 | 739 | - | - | |
| Lsi08g01280 | 750 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | IPR002885 | - | |
| Lsi08g01280 | 750 | PANTHER | BNACNNG15330D PROTEIN | 52 | 348 | - | - | |
| Lsi08g01280 | 750 | PANTHER | BNACNNG15330D PROTEIN | 272 | 376 | - | - | |
| Lsi08g01280 | 750 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Lsi08g01280 | 750 | Gene3D | Tetratricopeptide repeat domain | 497 | 719 | IPR011990 | GO:0005515 | |
| Lsi08g01280 | 750 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | IPR002885 | - | |
| Lsi08g01280 | 750 | PANTHER | BNACNNG15330D PROTEIN | 339 | 469 | - | - | |
| Lsi08g01280 | 750 | PANTHER | BNACNNG15330D PROTEIN | 442 | 739 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01280 | - | - | - | csv:101213039 | 1268.06 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g01280 | Lsi-Chr8:21203936 | Lsi05g01250 | Lsi-Chr5:20296971 | 2.65E-95 | dispersed | |
| Lsi08g01280 | Lsi-Chr8:21203936 | Lsi02g02283 | Lsi-Chr2:29396406 | 6.84E-55 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g143 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bhi04g00088 | . | . | . | . | . | . | Cla08g01390 | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme03g01545 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01280 | . | Chy03g01053 | . | |
| Vvi18g1172 | . | . | . | . | Bpe02g00620 | . | . | Bma01g02099 | . | Cmo15g00648 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla08g00647 | . | . | . | . | . | . | Cone4ag1444 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cma12g00384 | . | . | Car15g00587 | Cpe11g00286 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01280 | . | Chy03g00560 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012001 | 0 | 2 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 0 | 1 | 25 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lsi08g01280 | Lsi_Chr08 | FPKM | 0.736965 | 0.992692 | 1.248096 | 1.08626 | 0.438465 | 0.55074 | 0.581929 | 16.874077 | 17.043291 | 17.903973 |