Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01282 ATGAACTATTCTTCTTCTTCTTCTTCTTCTTCTCTCTCCGACCAACTTAACCTCCTTGGGAAAGTCGAGGTTTTTAAACTCCATGGTCGTGATAAAGCTGCCCGGAATGTCCTCCTCATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGCCAGGCCGTGAATTTCTATTTGAAGGACAAGATTTTTCCCTTTCTCAAAGATGGGCCCTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATTTCCCTGGAGTTTCCAATCTCAAGGCAATCTATGAGGCCATTCCAATCGCTATTAAGAGCAACATTGAAGCTGTTTATTTTCTCCACCCCAGCTTGCAGGCCCGTGTGTTCTTCGCCACTGTCGGCCGCCTCATGCTCGATGCTGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAATATGTTAGAAGGAAAGAAATGGAGTTACCGCAGTTTGTGTATGATCATGATGAGAAATTGGAGTTTTGTCCTGTGATGGACTCTGATTTGGAGAATGATTATCTCAGGCTCTTCTCCCCCTCGCCATCTGTGGATTCTGCAGTTTCTACGTACTCCATGAGGTGTTTTGCTTGA 627 44.5 MNYSSSSSSSSLSDQLNLLGKVEVFKLHGRDKAARNVLLIVGKYFPARFVSSQAVNFYLKDKIFPFLKDGPFTVVYIHTDVHWTENFPGVSNLKAIYEAIPIAIKSNIEAVYFLHPSLQARVFFATVGRLMLDAELYNKVKYVKRVEFLWEYVRRKEMELPQFVYDHDEKLEFCPVMDSDLENDYLRLFSPSPSVDSAVSTYSMRCFA 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21209758 21210874 - Lsi08G012820.1 Lsi08g01282 669208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01282 208 PANTHER PROTEIN, PUTATIVE-RELATED 5 208 - -
Lsi08g01282 208 Pfam Divergent CRAL/TRIO domain 35 169 IPR001251 -
Lsi08g01282 208 Gene3D - 19 171 IPR036865 -
Lsi08g01282 208 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 5 208 - -
Lsi08g01282 208 SMART sec14_4 18 167 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01282 - - - csv:116401625 375.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01733 Lsi-Chr2:23023742 Lsi08g01282 Lsi-Chr8:21209758 1.06E-08 dispersed
Lsi07g01073 Lsi-Chr7:16079869 Lsi08g01282 Lsi-Chr8:21209758 5.18E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g145 . . . . . . . . Cmo05g00333 . . . . . . . . Bhi04g00086 . . . . . . Cla08g01391 Cam08g1864 Cec08g1443 Cco08g1576 Clacu08g1558 . Cre08g1342 . . Cone17ag1433 Cone20ag0050 . . . . . . . . . . . . . . . . Cma05g00330 Car05g00277 . . . . . . . . . . . . . . . . . Lsi08g01282 . Chy03g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002691 0 2 0 1 1 2 3 2 2 2 2 2 3 1 2 4 2 1 3 2 2 2 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01282 Lsi_Chr08 FPKM 9.291667 8.769835 9.414895 4.942053 7.027285 5.923644 8.845455 0.521616 0.313499 0.204356