Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01288 ATGGCCGTCGACCAGCTTCTCGCCATTCCGGCGAATCCAAAAAAGAAGCTCCAACTCCTCCAAAACGTACCAGGCCTAAACCCTAAAACCATCACTCCCATTTCCCAACATGGCCTCCTCCATTTCATCCAATCCACTGCTCTCAAAAGTCCCGACGAACCCTTCTACATCTTCGACTTGGCCGTTGTCGCCACCCTCTTCGACCACTGGTCTCAGTCCCTTCCCACCGTCCGCCCTTTCTACGCCGTCAAATGCAACCCTAACCCGGCCCTCCTCGCCGCCATGGCCGCCCTCGGCTCCAATTTCGACTGCGCCAGTCGGGCCGAAATCCAATCTGTTTTAGACCTTGGCGTCTCCCCTGATCGAATCGTCTTTGCCAATCCTTGCAAACCCGAATCCCACATCGAATTCGCCGCCGCCGTTGGAGTTAACCTCACTACGTTCGATTCTGTTGACGAGATCGAGAAGATTCGACGTTGCCACCCGAAATCCTCTTTGTTGATTCGGATCAAACCATCCGACGACGGCGGCGCTCGGTGCCCATTGGGAAACAAATACGGCGCACTACCGGAAGAAATTATCCCTCTTCTCGAAGCTGCTAAATCTGCTGAACTCCCCGTCGTTGGCGTGTCATTTCACATTGGAAGTGGGGCTACTGAAACAGGAGCTTATTCGGCCGCCATCTCCGCTGCGAGAGAGGTTTTTGAAACGGCTGTCAGACTTGGCCTGCCGCCAATGAATGTGCTCAACATTGGCGGCGGATTCACTGCCGGACCCCAATTCGAAGAAGCGGCTGTGACAGTAAATTCGGCCCTCGAAGAGTATTTTCCGGCGGAAATGAGTATCACCCTCATGGCTGAACCGGGGCGGTTTTTTGCGGAATCGGCGTTCACTCTGGCCGTCAGCATCATCGGAAAACGGGTGAGGGGAGATCTAAGGGAGTATTGGATCAACGACGGGATTTATGGGTCCATGAACTGTATACTATACGATCATGCGACGGTGACTTGCAGGCCGTTGGCACTGAAATCGAACCGGAAAAACCCCACGTGCGGCGGAGGGAAAATGTACTGCGCCACTGTGTTCGGCCCCACGTGCGACGCTTTGGACACTGTTTTGACCGGACAGCAGCTGCCGGAGTTGGAGGTGGGAGACTGGCTGGTTTTTCCGAAGATGGGGGCTTACACGGCGGCAGCAGGATCCAATTTCAATGGGTTTAACACAGCGGCGATTGAGACTTATGTTGGGTACTCCGAACAGGGAAACGGCGCCGTATTGGATTGA 1284 54.6 MAVDQLLAIPANPKKKLQLLQNVPGLNPKTITPISQHGLLHFIQSTALKSPDEPFYIFDLAVVATLFDHWSQSLPTVRPFYAVKCNPNPALLAAMAALGSNFDCASRAEIQSVLDLGVSPDRIVFANPCKPESHIEFAAAVGVNLTTFDSVDEIEKIRRCHPKSSLLIRIKPSDDGGARCPLGNKYGALPEEIIPLLEAAKSAELPVVGVSFHIGSGATETGAYSAAISAAREVFETAVRLGLPPMNVLNIGGGFTAGPQFEEAAVTVNSALEEYFPAEMSITLMAEPGRFFAESAFTLAVSIIGKRVRGDLREYWINDGIYGSMNCILYDHATVTCRPLALKSNRKNPTCGGGKMYCATVFGPTCDALDTVLTGQQLPELEVGDWLVFPKMGAYTAAAGSNFNGFNTAAIETYVGYSEQGNGAVLD 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21241264 21242547 + Lsi08G012880.1 Lsi08g01288 669214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01288 427 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 242 256 IPR022657 -
Lsi08g01288 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 81 99 IPR000183 GO:0003824
Lsi08g01288 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 204 217 IPR000183 GO:0003824
Lsi08g01288 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 393 406 IPR000183 GO:0003824
Lsi08g01288 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 101 113 IPR000183 GO:0003824
Lsi08g01288 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 303 IPR000183 GO:0003824
Lsi08g01288 427 SUPERFAMILY PLP-binding barrel 59 295 IPR029066 -
Lsi08g01288 427 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 294 393 IPR022643 GO:0003824
Lsi08g01288 427 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 81 99 IPR022653 -
Lsi08g01288 427 SUPERFAMILY Alanine racemase C-terminal domain-like 277 410 IPR009006 GO:0003824
Lsi08g01288 427 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 63 293 IPR022644 GO:0003824
Lsi08g01288 427 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 31 418 IPR002433 GO:0006596
Lsi08g01288 427 Gene3D Alanine racemase 63 292 IPR029066 -
Lsi08g01288 427 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 52 413 IPR009006 GO:0003824
Lsi08g01288 427 PANTHER ORNITHINE DECARBOXYLASE-LIKE 31 418 - -
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 319 332 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 53 77 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 360 370 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 380 393 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 79 106 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 123 147 IPR002433 GO:0006596
Lsi08g01288 427 PRINTS Ornithine decarboxylase signature 153 175 IPR002433 GO:0006596
Lsi08g01288 427 CDD PLPDE_III_ODC 52 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01288 K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase [EC:4.1.1.17] - csv:101212960 636.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01286 Lsi-Chr8:21230817 Lsi08g01288 Lsi-Chr8:21241264 5.40E-178 dispersed
Lsi08g01288 Lsi-Chr8:21241264 Lsi10g00389 Lsi-Chr10:5912209 1.50E-17 dispersed
Lsi08g01287 Lsi-Chr8:21235955 Lsi08g01288 Lsi-Chr8:21241264 3.22E-159 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g155 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01395 Cam08g1870 Cec08g1448 Cco08g1582 Clacu08g1563 . Cre08g1348 . . . . . . . Cme03g01541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01288 . Chy03g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003217 0 2 0 0 0 3 1 3 2 1 2 2 2 1 1 2 2 1 2 3 1 1 2 2 1 3 4 2 1 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01288 Lsi_Chr08 FPKM 14.80161 15.337327 0.0 0.0 9.404118 7.831059 8.766658 0.0 0.0 0.0