Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01289 ATGGAAGGAAGTTCAAAGCTTAGCCATTTGTTGGTGACAGTATTTCTATACACTTTAGCAACCATGACGGCCTTTCCAGCCATTACAGATGTCACCATGTCCGCTCTCTGTCCCGGTCAAGACGAGTGTTCTCTCGCTATTTATTTCACCGGCTTTCAACAAGTCGTGACTGGAATTGGTGCGTTGCTCATGGTGCCGTTGCTCGGAAACCTATCGGATAAGTTTGGGAGGAAGACTATTCTCACCATTCCATTGGTTCTCACCGTAATTCCCCTCGGGATATTGGGATATGGGAGGTCGAGAAGTTTGTTTTACGTTTATTTTGTGTTGAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGCTTGGCCGTCGCCTACGCGGCCGATAATGTACCGGAACACCAGCGAGCTTCTGCATTCGGAATGCTATCCGCCATTATCTCTTCTGCTTCCGTCTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCATCCACTTTTCAGGCAGCGGCTTCCACTGCGGCTGTGGCGGCAGTGTATATGAGGGTCTTCCTTACTGATTCTGCCGCCGATTGCAATCTTTCTGCTCCCTTACTTTCTGGGGAAAATGTAGAATCTGTTTCTTCGGATCCAATTTCGTCTAAAAAGGAAAAACATACTACGAACTTGCCTTCACTGACGGACCTTTTTTCCCTCTTGACATTTTCACAAGCGGCCGTTGTTGCATTTTTTAGCAATCTTGCTGATGTCGGGCATCATGCTTCAATAATGGTTAGTCTTTTGATCCAGGGATCTAATCTGGTCGTTGATGATCACCCTTGTCTTGCTCAGATTTACTATTTAAAAGCCAAATTTCACTTTGACAAGGATAAAATTGCTGATTTGATGGTGATTTCTGGGGCTGCTTCGACTATTTCACAGGCATGTCATACTATTTTATTTTACTTTCTACTTTTAATGCCCATCTTGGTTCCTGCTCTAGGAGAGAATAGGCTACTCTCAGTTGGGGTCTTTTTCAACTGCATTCATATGCTTCTTCACAGCTTAGCTTGGTCTGAATGGGTTTCCTATGTTGCTGCAATGTTTTCCATTCTGTATATTTTCTGGCAGCCTTGTCTGCAAAGCATAGTGTCGAAACAAGTTGGGGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGGATATCTTCATTTGCCAATGTTGTTTCTCCATTTGTATTCTCCCCTTTAGCAGCTTTGTTTCTCTCTGATAACGCTCCATTTCATTTCCCTGGATTTAGCATCATGTGCGCTGGATCTGCTGCGATGATAGCATTTATTCAGAGTATGATGATAAGGCCTCCTACCAAAGCTTGTAGCAGCAGCCATGTGGAGGCATACAATTTAAATAAAAAAGGCAGTTTGATTCAGATCGGATTTGCGCCACGTGTCCGGTCTTTAAATAGCATGTCAAAATCAAAGCCCCAAAAGCTTTCACCTTCAAACCCCCAACCCCTTACCCAATTTTCTATTATATCATTTTTTCCCTCGTTTTTCTCTGCTCCGCCCTTCGCCGTTGGCTGCGTCGGAGACCACCGGAAACCGCCGTCTCTGCCTCTTAACAGACGCCGTTTCCTCCATTCAGCTTTTCGCCGTCGTGTTCCTCCGGTGTTAGCCAACGGCTTGTATTCTCAATATCCTCTTAACGCCCTCCATTTTTTGATTTCCGATTATATTGACTCAACTTGCTCTCTACGATTGCTGAGTTTCTTCATCTGCATTTTGGTTGATCCATCTTCATTTTCGTTTCTGGAATTGGTGTTTGGTTTTTGTTCGGCGATAATGAATGGTCATGATGTGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTATCCGAACGTATTCGACGGTTTTTTACCGTTTTTAGTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAAGATGATCACCAGCACCACCGGAAGATAATTACTAGTGATCCTTACGTCACCGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACACGAGTTATTTCGAACTCGCAGAACCCTATCTGGAATGAGCACTTCAAAATCCCTCTTGCTCATCCGGTATCGCAGGTGGAGTTTCATGTCAAGGATAACGATGTGTTTGGGGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAACCATAGATGATTGGTTTCCGATTATCGGTTCGTTTGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGTAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCCGAACATTTTGGCGTTCGGAATTGCTATTTTCCGGTACGGCATGGGGGTTCGGTAACGCTTTATCAGGATGCGCACGTTCCTGATTCCATGTTGGAGAAGATTGAATTGGAAAAGGGGAAAGTGTATCGGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATTTATCATAAGGTGAAGCTGGTGAGAGAGCCTTCGAAGCCGTTGCCTAATGGTGGGAATTTGAACTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGTGTGCGAGTCTTGCTATTGGTTTGGGATGACAAGACCTCCCACAGCAAATTCTTCATTAATACGGTGCGAGTGGGTTTGTGCTCTGTATGGCATCTGGCTTGTGAAATTTCTCAAATTTGTCAGTTTATGAAACCAATAGCAGTAATTTGTGAAGAAGCTCAGTGTCCTCTAACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTTAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGCACGCTTTATACCATGTCTCACTACGTATAATGTAGAAATCAGTAAATTTCTGAAGGAACATGACTCATTAGTTGCAGTTTACTCTCCCTCTTGCCATTTGCACCATTTAGATTTAAAATTTTATTATATATTTTCACTTGCCTTGGAACAGCGTGCAATTGACTTGAGGGTTGTTGGAACGCTTTTCACCCATCATCAGAAGTGCGTGATTGTGGATACACAAGCCTCTGGAAATTACCGGAAAATAAGTTCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGATGATGATTATCACAATCCAACTTTTTCTGCAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCAGCATACGATGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGGGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAGTCCCCAACGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGGCAATTGGCATGTTCAGGTTTTCCGGTCAATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATTTACATTGAGAATCAGTATTTTCTTGGATCGTCATTTGCATGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAATTGGCGTTGAAGATTGCTAGTAAGATAAGAGCGAATGAGAGGTTTGCTGTCTACATTGTGATACCAATGTGGCCTGAAGGGGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTATTTTGGCAGGGTCAGACAATCCAAATGATGTACGAAGTCATTGGACGAGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCCTCAGACTACTTAAACTTTTACTGTCTTGGCAATAGGGAAGCGCATGAGGACTTGACATGTTCCTCTGGTCATTCTTCCAAGAGCGAAGATGTGACTTATAGAGTTGGCATATTTGACAAATGGTTCTCTGATTTCATAAATGGTCCAATGGTGTCGCTTCAGCCTAAAATTGGCGTTTCAGACTCACAAAAGTTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAATAGTAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTTACACATGGGGTAAGAAGAAACAACATCCACGAGGCCAGATTTATGGCTATAGAATGTCGCTCTGGGCTGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGGCAGAAAGTTTGACTTGTGTGAAGGCAGTCAACAAGATAGCTGAAGATAACTGGAAGAAATACACAGCAACGGAATTTGCGCCATTGCAAGGGCACCTCCTCAAGTACCCGATCGAGGTCAGCCAAAGTGGGAAGATAGGTCCGTTGACTGGACACGAGACTTTTCCTGACTTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTTCCTGATGCTCTTACTACATAA 4737 44.06 MEGSSKLSHLLVTVFLYTLATMTAFPAITDVTMSALCPGQDECSLAIYFTGFQQVVTGIGALLMVPLLGNLSDKFGRKTILTIPLVLTVIPLGILGYGRSRSLFYVYFVLKCVTSTVCEGSVQCLAVAYAADNVPEHQRASAFGMLSAIISSASVCGTLCARFLSIPSTFQAAASTAAVAAVYMRVFLTDSAADCNLSAPLLSGENVESVSSDPISSKKEKHTTNLPSLTDLFSLLTFSQAAVVAFFSNLADVGHHASIMVSLLIQGSNLVVDDHPCLAQIYYLKAKFHFDKDKIADLMVISGAASTISQACHTILFYFLLLMPILVPALGENRLLSVGVFFNCIHMLLHSLAWSEWVSYVAAMFSILYIFWQPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPFVFSPLAALFLSDNAPFHFPGFSIMCAGSAAMIAFIQSMMIRPPTKACSSSHVEAYNLNKKGSLIQIGFAPRVRSLNSMSKSKPQKLSPSNPQPLTQFSIISFFPSFFSAPPFAVGCVGDHRKPPSLPLNRRRFLHSAFRRRVPPVLANGLYSQYPLNALHFLISDYIDSTCSLRLLSFFICILVDPSSFSFLELVFGFCSAIMNGHDVEPLVYVHGDLDLKIIEARRLPNMDLLSERIRRFFTVFSSCRKPFSKKKDKDDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLVMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDSMLEKIELEKGKVYRHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTVRVGLCSVWHLACEISQICQFMKPIAVICEEAQCPLTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQARFIPCLTTYNVEISKFLKEHDSLVAVYSPSCHLHHLDLKFYYIFSLALEQRAIDLRVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPEHRLLKDLDTVFDDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYIVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIGRELKYKNLENAHPSDYLNFYCLGNREAHEDLTCSSGHSSKSEDVTYRVGIFDKWFSDFINGPMVSLQPKIGVSDSQKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKQHPRGQIYGYRMSLWAEHLGNIDDCFKEAESLTCVKAVNKIAEDNWKKYTATEFAPLQGHLLKYPIEVSQSGKIGPLTGHETFPDFGGKVLGARSNLPDALTT 1578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21243604 21261317 - Lsi08G012890.1 Lsi08g01289 669215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01289 1578 SMART pld_4 1054 1089 IPR001736 GO:0003824
Lsi08g01289 1578 SMART pld_4 1424 1451 IPR001736 GO:0003824
Lsi08g01289 1578 Gene3D Endonuclease Chain A 1225 1470 - -
Lsi08g01289 1578 Gene3D Endonuclease Chain A 1007 1172 - -
Lsi08g01289 1578 ProSiteProfiles C2 domain profile. 607 756 IPR000008 -
Lsi08g01289 1578 Gene3D MFS general substrate transporter like domains 5 448 IPR036259 -
Lsi08g01289 1578 CDD C2_plant_PLD 621 779 - -
Lsi08g01289 1578 Pfam Phospholipase D C terminal 1498 1568 IPR024632 -
Lsi08g01289 1578 Pfam Phospholipase D Active site motif 1055 1089 IPR001736 GO:0003824
Lsi08g01289 1578 Pfam Phospholipase D Active site motif 1425 1451 IPR001736 GO:0003824
Lsi08g01289 1578 SUPERFAMILY Phospholipase D/nuclease 1243 1500 - -
Lsi08g01289 1578 CDD MFS_SLC46_TetA_like 10 448 - -
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 1001 1577 - -
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 617 921 - -
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 955 994 - -
Lsi08g01289 1578 Pfam C2 domain 625 758 IPR000008 -
Lsi08g01289 1578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 624 779 IPR035892 -
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 1001 1577 IPR015679 -
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 617 921 IPR015679 -
Lsi08g01289 1578 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Lsi08g01289 1578 SMART C2_3c 626 755 IPR000008 -
Lsi08g01289 1578 Gene3D C2 domain 623 786 IPR035892 -
Lsi08g01289 1578 Pfam Major Facilitator Superfamily 10 408 IPR011701 GO:0022857|GO:0055085
Lsi08g01289 1578 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1054 1089 IPR001736 GO:0003824
Lsi08g01289 1578 PANTHER PHOSPHOLIPASE D 955 994 IPR015679 -
Lsi08g01289 1578 SUPERFAMILY MFS general substrate transporter 15 453 IPR036259 -
Lsi08g01289 1578 SUPERFAMILY Phospholipase D/nuclease 806 1160 - -
Lsi08g01289 1578 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1424 1451 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01289 Lsi-Chr8:21243604 Lsi09g01919 Lsi-Chr9:28031240 0 dispersed
Lsi10g00817 Lsi-Chr10:11209635 Lsi08g01289 Lsi-Chr8:21243604 1.51E-25 dispersed
Lsi08g01289 Lsi-Chr8:21243604 Lsi08g01290 Lsi-Chr8:21270174 4.04E-124 tandem
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01289 Lsi-Chr8:21243604 0 wgd
Lsi11g01219 Lsi-Chr11:20777835 Lsi08g01289 Lsi-Chr8:21243604 1.06E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01289 K01115 - csv:101213442 1570.44