Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01291 ATGGAAGAAATTTGGAAGCTAAGCCATTTGTTGGTGACAGTATTTCTATACACTTTTGGAACCATGATGATCATTCCAGCCATTACAGATGTCACCATGTCGGCTCTCTGTCCCGGTCAAGACGAGTGTTCTCTCGCCATTTACTTCACCGGCTTTCAACAAGTCGTGACGGGACTTGGGGCATTGCTAATGATGCCATTGCTAGGAAACTTGTCGGACAAGTTTGGGAGAAAGACTCTACTCACCATTCCCATGATTCTTACCGTAATTCCTCTCGGGATATTAGGGTATGGAAGGTCGAGGAATTTGTTCTACGTTTATTTTTTGTTCAAGTGTGTGACAAGTACGATTTGTGAATGGAGCGTTCAGTGTTTAGCCGTTGCTTATACCGCCGACAATGTACCGGAGCACCGGCGAGCTTCTGCATTTGGACTGCTATCCGCCATTGGATCTTTTGCTTTCGTCTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCATCCACTTTTCAGGTGGCGGCTTCCACGGCGGCTGTGGCAGTAGTTTATATGAGGATTTTCCTAACTGATTCTGTTGCCGATTGCAATCTTTCTGCTCCCTTACTCTTGACATTTTCACTAGCGGCCACTGTTGCATTTTTTGGCAATCTCGCTGATGTTGGCCTTTATGCTTCTATACTGCTACTTTTATTGCCCATCTTGGTTCCTGCTCTAGGGGAGGACAGGCTGCTCTCAGTTGGGCTTTTTTTCAACTGCATTCATATGCTTCTTTACAGCTTTGCTTGGGCTGACTGGGTTGCCTATGTTGCTGCTATGTTTTCCATTTTGTATATTTTCTGGCGGCCTTGCCTACAAAGCATAGTATCAAAGCAAGTTGGTGCAAGTGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAATGTTGTTTCTCCATTGGTATTCTCCCCTTTAACAGCCTTGTTTCTCTCCGAAAATGCTCCATTTTATTTTCCTGGATTTAGCATCATGTTCGCTGGTTCTGCTTCGATCACACACAAACTTGGACAGAGTGAGATGAAAATGAGTATGATAGCATTTGTTCAGAGTTTGATGATTAGGGCTCCTATCAAAGCCAGCAGCACCAGCCATGTGGAAGCCTAA 1155 45.11 MEEIWKLSHLLVTVFLYTFGTMMIIPAITDVTMSALCPGQDECSLAIYFTGFQQVVTGLGALLMMPLLGNLSDKFGRKTLLTIPMILTVIPLGILGYGRSRNLFYVYFLFKCVTSTICEWSVQCLAVAYTADNVPEHRRASAFGLLSAIGSFAFVCGTLCARFLSIPSTFQVAASTAAVAVVYMRIFLTDSVADCNLSAPLLLTFSLAATVAFFGNLADVGLYASILLLLLPILVPALGEDRLLSVGLFFNCIHMLLYSFAWADWVAYVAAMFSILYIFWRPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFYFPGFSIMFAGSASITHKLGQSEMKMSMIAFVQSLMIRAPIKASSTSHVEA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21287349 21296107 - Lsi08G012910.1 Lsi08g01291 669217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01291 384 Gene3D MFS general substrate transporter like domains 5 349 IPR036259 -
Lsi08g01291 384 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Lsi08g01291 384 Pfam Major Facilitator Superfamily 10 363 IPR011701 GO:0022857|GO:0055085
Lsi08g01291 384 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 195 - -
Lsi08g01291 384 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 228 371 - -
Lsi08g01291 384 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 195 - -
Lsi08g01291 384 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 228 371 - -
Lsi08g01291 384 SUPERFAMILY MFS general substrate transporter 10 343 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01291 - - - csv:101213676 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01291 Lsi-Chr8:21287349 Lsi08g01293 Lsi-Chr8:21313565 1.02E-128 dispersed
Lsi08g01290 Lsi-Chr8:21270174 Lsi08g01291 Lsi-Chr8:21287349 2.78E-126 tandem
Lsi08g01291 Lsi-Chr8:21287349 Lsi08g01292 Lsi-Chr8:21298630 9.11E-167 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01291 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 1.223178 1.493923 1.963405 0.0 0.0 0.0