Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01295 ATGAGCGAAAACCAAAAACGAAATATCGAAGTCGGGAGAATGATTTCCGTTTGCTCTGCTAGAACAATTCAAGCTTCACCTTCTTCTATTCAGTTGTTTTTCCCTCGAAATCATAGAAGAATCACTTCTAATGTTCTTCGATTTGCCACCAATCTCTCCACTAAATGCTCGGATTACGATGAATATGGTGAAGCTCAATCCGAACGGAGAGCCAATTACGCCGGAATCAGACTGGAAGAGACCGTGGACATAAATCCCGGTAAAGTTCGTCTTGATTCTTGGATATCTTGCCGCATTAACGGCATTAGTAGGGCTCGTGTTCAGTCCAGTATTAGGGCGGGACTAGTTTCAGTCAATGGCCGAATTATCGATAAGGTTTCTCACAATGTAAAAGCTGGGGATATGATTAATTGTACAATTTCCGAGTTGCAACCATTGAGAGCTGAACCCGAAGATATTGATGTGGATATAGTTTATGAAGATGAACATGTTTTAGTCGTAAACAAACCAGCACACATGGTTGTTCATCCAGCACCTGGAAATGCGACAGGAACACTAGTAAATGCCATTCTTAACCACTGCAGTCTCCCAATGGTTGCAACATCAAATGAGGAACATCCGTCGGATACGGATATTTCTGATGATGAGTTCAGTTCAATTGAAATTATTTCTAGAGTTTCTGAGGCACCTATTCGTCCCGGTATTGTGCATAGGTTAGATAAAGGAACTAGTGGATTGCTTGTTGTTGCCAAGGATGAACATTCCCATGCTCACTTATCTGCTCAATTCAAGCAACACTCAATTGAGAGAGTTTACATCAGTCTCACATGTGGAGTTTCTCCCTCGACTGCTGGACGTATTGAGGTACCAATTTGCCGTGATCCGAACAATCGTATCCGCATGACCGCAGTATCTGGAACAAATAACAATCCACATGCAAAGCACGCTGCTAGTAGGTACAAAGTTATGGAAATTTTAGCTCAAGGAGGTTCTTCATTGGTTGAGTGGAGATTAGAAACAGGCCGCACACATCAGATCCGTGCACACGCAAAGTATATGGGAATACCGTTACTTGGAGACGAGGTCTATGGAGGTACCAAGAGCATGGCCATGTCGCTGCTTCGAACTAAAACATCATCTAGTTGTCACAGCCAACTTATGCAACTTGTTTCTTCATTAGAGAGGCCCTGCCTTCATGCTCTGACTCTTGGGTTACCAAATCTTAGCTGGGAGCCTCCAGTATCTGGCAAGTAG 1254 43.3 MSENQKRNIEVGRMISVCSARTIQASPSSIQLFFPRNHRRITSNVLRFATNLSTKCSDYDEYGEAQSERRANYAGIRLEETVDINPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRIIDKVSHNVKAGDMINCTISELQPLRAEPEDIDVDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSNEEHPSDTDISDDEFSSIEIISRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVSPSTAGRIEVPICRDPNNRIRMTAVSGTNNNPHAKHAASRYKVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTKTSSSCHSQLMQLVSSLERPCLHALTLGLPNLSWEPPVSGK 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21331974 21335674 - Lsi08G012950.1 Lsi08g01295 669221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01295 417 SMART s4_6 89 151 IPR002942 GO:0003723
Lsi08g01295 417 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 89 385 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi08g01295 417 CDD PseudoU_synth_RluA_like 164 375 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi08g01295 417 Pfam S4 domain 89 136 IPR002942 GO:0003723
Lsi08g01295 417 Gene3D - 74 144 IPR036986 GO:0003723
Lsi08g01295 417 ProSiteProfiles S4 RNA-binding domain profile. 89 162 - -
Lsi08g01295 417 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 405 - -
Lsi08g01295 417 ProSitePatterns Rlu family of pseudouridine synthase signature. 236 250 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi08g01295 417 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 87 405 - -
Lsi08g01295 417 SUPERFAMILY Alpha-L RNA-binding motif 57 190 - -
Lsi08g01295 417 SUPERFAMILY Pseudouridine synthase 149 408 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi08g01295 417 Gene3D Pseudouridine synthase 146 414 - -
Lsi08g01295 417 CDD S4 89 168 - -
Lsi08g01295 417 Pfam RNA pseudouridylate synthase 163 350 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01295 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] - csv:101213921 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01716 Lsi-Chr2:22882281 Lsi08g01295 Lsi-Chr8:21331974 2.25E-13 dispersed
Lsi06g01661 Lsi-Chr6:26881166 Lsi08g01295 Lsi-Chr8:21331974 6.44E-06 dispersed
Lsi08g00929 Lsi-Chr8:17691076 Lsi08g01295 Lsi-Chr8:21331974 2.78E-07 dispersed
Lsi08g01295 Lsi-Chr8:21331974 Lsi11g00625 Lsi-Chr11:6640937 1.62E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01295 Lsi_Chr08 FPKM 7.329114 8.504202 10.019472 13.465694 14.522195 12.871219 13.875113 12.794762 8.248198 10.848596