Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01297 ATGTCTCTACTCCACCTGACAAAACCTCCTCCTCCTTCTTCTTCATTCAAACTCAACGTTTTTCAATGTCTACAACTTCTTTTGATTCTCCAACCTGCTAGTGCTGCTATAAAGATTCCTCCCGGTTACTCGGTTCCTGCCGTTTTCGTCTTCGGGGATTCGATTGTCGATACCGGCAACAACAACGATCTCATTACTCAAGCTAAGTGTAACTATCCACCTTACGGTCGAGATTTTCCTGGCGGACGCCCAACCGGCCGATTTTCCAACGGCAGGGTTCCCTCTGACCTAGTAGGTATCAAAGCGTTCTTGCCACCGTATGTGAACACAAATCTTCAACCTGAAGACCTAATCACTGGCGTCAACTTTGCTTCTGGTGGAGCTGGATTTGATCCTTTAACCTCTAAGACCGCGCCAGCAATATCACTTGAAGCTCAATTAGCAATGTTTAGAGAATACAAAAAGAAGCTAGAAGGGCTAGTAGGAGAAGAAAGAGCCAAATTCATAATAGACAATAGCCTTTACTTGGTTGTGGCTGGAAGCAATGACATTGCCAACACATTTTATCTTGCACGAATAAGACAAGTTCATTACAACATCAATACTTACACGGATTTCATGGTCCAATCTGCTTCTACTTTTGTCAAGGAATTATACGCAGCCGGTGGACGGAGGATCGGGTTTTTCGGGACTCCACCACTCGGATGTGTACCGTCACAGAGAACTTTGGCAGGAGGGATTGAAAGGGCATGTGTGAATGAGTATAACAAGGCTTCAGAGCTTTTCAATGGGAAATTGCATTCCACTTTGGATTACCTTCAAACTATACTGCCTGATAGTAGAGTGGTTTACGTGGATATTTACAACCCTCTACTTGATGTCATCCAAAACTATGTTCCCCCAATCATGGAGCCTGCTACATTCGTTGTCGATAAATTAAAAGGTTTTGGGACCGCAACCCAGAATTTCTTTGATGGCTTAGTTCATCGCCGCGAAAAATCATCTCGCCGCAGTCCGATTGAAATTCTGAAGCGGCTACAAAGGGAAGCATTTTCAGATTTAATGAGACTCAGGGACAGACAAGACAAGGTAGAGAAGGTACTATCCTTTTATAATACACAGAGGAGTAGCCCATTCCAAGAAAATGCCACCCATGTAAAAGGAGAGGTTAACATATTGGGCGCATTGCTATTGATGAGTGTTGTTGATAATCATAGCTTCAATGCACTTCGTAGAGCAGGAATCTCAACAGGAATTCACTCAAGATTGACTTTTGAAACAACTGTAAGAGAGAATGATTCTCTTGTTGCAGAGTTTGTAGCCAATCAGAAAGGCAAGGTGGATTTTGGTGTTGATTCTGGAAGTGAACTTACTCTATCTAAAGTTTTTTACAAGGCTAGGGTGAGAGATTGGATGTCTGCAATTGTAGTTCCTGTTGGAGCTCGATGTAGGGATGTTGCTGTTATTGCAAATCCTTCTCATCAGGAAAAGGGTCTCACTGATACTTCATCTTTTGGACCACCCCTTTTGGATCACCCTAATGGTGGTGCCATTGGTTTAACAGTGAGAAAATCTAATGTCACTGCTTCCTTAGCTCAATTTATTTCTTCAGAGAGAATTCAACCAAGTTTTGATCGGATTCAACATTACTTTGGTACTTTTGGCCAACTGGTGTGTCAACTTCCAAGAGGAACAAAATTATCGGTTCTGGGTCTTCTCCAAGCAACAAAATTATCTAATCAACATGTCAATCTTGGAGCTCTTACAATTCCAGTGTGTCTTAGTCGACATAAATCTGCTGAAACAGTTGAGGCATCTGATCCACGTTTGTTAACAGTTTCAGGGGAAGCTATTTCAAGGGGATCTCTTGCTTTACTGCTGGAGTCAGAACTTGATGAAGTAACCAGAATTGGAGGTTGGGTTGAGCTGAGCCAATCAAATCCCAAATATTTGCAATGGGCTGTGTCAATGTCTGATAATAATAATGAAGATGTCTTAGGTTGGGGAATGAGTTTAAGTGGGATTCTTGGAGGCCCATTAGATGGGGATCAGTTTCAGGTTGAATCTTATGTCAAACTGAACATGAGTAAGAGATTCAGCTTAAAGCCAGGAATTGCATATGTCACAGACGGCAATGCCAAAATGATGGCCTTTGTGGTTCGGTCTAATTGGTCTCTCTGA 2181 42.37 MSLLHLTKPPPPSSSFKLNVFQCLQLLLILQPASAAIKIPPGYSVPAVFVFGDSIVDTGNNNDLITQAKCNYPPYGRDFPGGRPTGRFSNGRVPSDLVGIKAFLPPYVNTNLQPEDLITGVNFASGGAGFDPLTSKTAPAISLEAQLAMFREYKKKLEGLVGEERAKFIIDNSLYLVVAGSNDIANTFYLARIRQVHYNINTYTDFMVQSASTFVKELYAAGGRRIGFFGTPPLGCVPSQRTLAGGIERACVNEYNKASELFNGKLHSTLDYLQTILPDSRVVYVDIYNPLLDVIQNYVPPIMEPATFVVDKLKGFGTATQNFFDGLVHRREKSSRRSPIEILKRLQREAFSDLMRLRDRQDKVEKVLSFYNTQRSSPFQENATHVKGEVNILGALLLMSVVDNHSFNALRRAGISTGIHSRLTFETTVRENDSLVAEFVANQKGKVDFGVDSGSELTLSKVFYKARVRDWMSAIVVPVGARCRDVAVIANPSHQEKGLTDTSSFGPPLLDHPNGGAIGLTVRKSNVTASLAQFISSERIQPSFDRIQHYFGTFGQLVCQLPRGTKLSVLGLLQATKLSNQHVNLGALTIPVCLSRHKSAETVEASDPRLLTVSGEAISRGSLALLLESELDEVTRIGGWVELSQSNPKYLQWAVSMSDNNNEDVLGWGMSLSGILGGPLDGDQFQVESYVKLNMSKRFSLKPGIAYVTDGNAKMMAFVVRSNWSL 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21344753 21355256 + Lsi08G012970.1 Lsi08g01297 669223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01297 726 CDD SGNH_plant_lipase_like 46 298 IPR035669 -
Lsi08g01297 726 Pfam GDSL-like Lipase/Acylhydrolase 48 290 IPR001087 GO:0016788
Lsi08g01297 726 SUPERFAMILY SGNH hydrolase 47 296 - -
Lsi08g01297 726 Gene3D SGNH hydrolase 42 324 IPR036514 -
Lsi08g01297 726 PANTHER GDSL ESTERASE/LIPASE 303 726 - -
Lsi08g01297 726 PANTHER GDSL ESTERASE/LIPASE 303 726 - -
Lsi08g01297 726 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 48 59 IPR008265 GO:0006629|GO:0016298
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01297 - - - csv:101215602 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01297 Lsi-Chr8:21344753 Lsi01g00270 Lsi-Chr1:2404698 5.20E-71 dispersed
Lsi01g00580 Lsi-Chr1:4623222 Lsi08g01297 Lsi-Chr8:21344753 2.40E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . . . . . . . . Lsi08g01297 . Chy03g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005525 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01297 Lsi_Chr08 FPKM 2.13403 2.36042 3.278347 3.540832 4.766036 4.028813 5.367293 5.900697 6.520411 5.727396