Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01301 ATGTCTAATCTCTTCTTCACCTTTCTTCTCCTCTTTTCTTCCTTCTTTCTTCCCTCTTTCAATGCCTTGAGCCACCATTACTACGACCACACATGCCCTAATCTCGAGTCCATCGTCGCCCAAGAAGTCCACTTAGCCACTGCCAACGACAAGACCGTTCTTGCTGCGTTGCTTCGAATGCACTTCCATGATTGTTTCATCAGAGGTTGTGATGGCTCTGTGCTTCTCGACTCTAAGGGAAAGAACACAGCTGAAAAAGATGGTCCTCCTAATATATCTCTCCATGCTTTTTATGTCATTGACAATGCTAAGAAAGCTATTGAATCTACATGTCCTGGCGTTGTTTCTTGCGCTGATATCTTAGCCCTTGCTGCTCGAGACGCTATTGTTTTGTCTGGAGGTCCTCATTGGGAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCTATTGAAACTAGACAATTACCAGCTCCCACATTCAACTTCTCTCAACTCCAACAAAGCTTCTCCCAAAGAGGCCTTTCTTTACAAGATCTTGTTGCTCTTTCAGGTGGCCACACTCTCGGATTCGCCCATTGTTCATCGTTCCAAAATCGAATCCACAACTTCAACTCGAGCTTTGATGTTGACCCATCATTGCATCCGGCCTTTGCGGCCAGCCTCCGGAGCATATGTCCGGCGAGAAACAAGGTGAAAAACGCCGGCTCCGGCTTGGATTCAACTTCTACAGTATTTGACAATGTATATTTCAAGCTTCTTCTACAAGGGAGGAGCATTTTTTCATCAGATCAATCTTTACTTTCAAATTCCAAAACAAAAGCTTTGGTTACAAAATTTGCCAATGAACAACATCTCTTTGAGAAGGCTTTTGTGAAATCAATGGTGAAGATGAGTCAGATCGCCGGCGCCGGCCAAGAGGTCCGGCTAAACTGCAGGGTGGTCAGATGA 954 44.76 MSNLFFTFLLLFSSFFLPSFNALSHHYYDHTCPNLESIVAQEVHLATANDKTVLAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESTCPGVVSCADILALAARDAIVLSGGPHWEVPKGRKDGRISKAIETRQLPAPTFNFSQLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHNFNSSFDVDPSLHPAFAASLRSICPARNKVKNAGSGLDSTSTVFDNVYFKLLLQGRSIFSSDQSLLSNSKTKALVTKFANEQHLFEKAFVKSMVKMSQIAGAGQEVRLNCRVVR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21380032 21381803 - Lsi08G013010.1 Lsi08g01301 669227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01301 317 PANTHER PEROXIDASE 64 8 316 - -
Lsi08g01301 317 Pfam Peroxidase 40 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 Gene3D - 26 316 - -
Lsi08g01301 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PANTHER PEROXIDASE 25-RELATED 8 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lsi08g01301 317 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi08g01301 317 Gene3D Peroxidase, domain 2 158 299 - -
Lsi08g01301 317 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00571 Lsi-Chr1:4568992 Lsi08g01301 Lsi-Chr8:21380032 2.54E-144 dispersed
Lsi05g01275 Lsi-Chr5:20482664 Lsi08g01301 Lsi-Chr8:21380032 7.53E-127 dispersed
Lsi08g01301 Lsi-Chr8:21380032 Lsi10g00150 Lsi-Chr10:2437499 1.17E-87 dispersed
Lsi08g01301 Lsi-Chr8:21380032 Lsi01g00995 Lsi-Chr1:8224675 1.06E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01301 K00430 - csv:101214403 541.576