Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01302 ATGGAGAAACTTCCTTTAGCATTTGCTTTCTCTCTTGCTCTCTCCAACTTCTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAATCCGGCTCACGCTACCTTCTACGGTGATAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACCAGACGGGTTACGGGACAAGGACGGCGGCGCTGAGCACGGCGTTGTTCAACGACGGCGCATCGTGCGGTCAGTGTTTCAAGATTATATGCGATTACAAGACGGATCCACGGTGGTGTATTAAAGGGGCGTCAGTGACAGTGACGGCCACCAATTTTTGCCCACCAAATTTCGCTCTTCCAAACAACAATGGCGGATGGTGTAACCCTCCGCTTAAACATTTCGACATGGCTCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTTCTCTTCCAAAGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTGCCTTCATCTTGGAGATTTGGCCAAACTTTTGCGAGCAAGGTCCAATTCACCTAAGAAAAAGACCCCGCACGGATTTAGGGTTGTGGGTTTAGAGGTGATCGGATTGGCAGAGGCGTGCCAAGTGGTTTTTTTTAATCTACGGAAGCAGCCCGCCATCTTTATTTCAGCTATCTGA 684 49.42 MEKLPLAFAFSLALSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLFQRSPQVMAKPKFSTMLCLHLGDLAKLLRARSNSPKKKTPHGFRVVGLEVIGLAEACQVVFFNLRKQPAIFISAI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21385779 21388109 - Lsi08G013020.1 Lsi08g01302 669228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01302 227 SUPERFAMILY Barwin-like endoglucanases 18 155 IPR036908 -
Lsi08g01302 227 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Lsi08g01302 227 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lsi08g01302 227 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Lsi08g01302 227 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Lsi08g01302 227 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Lsi08g01302 227 Gene3D - 19 157 IPR036908 -
Lsi08g01302 227 PANTHER EXPANSIN-A15 7 158 IPR002963 GO:0009664
Lsi08g01302 227 PANTHER EXPANSIN-A11 7 158 - -
Lsi08g01302 227 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lsi08g01302 227 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Lsi08g01302 227 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Lsi08g01302 227 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Lsi08g01302 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 157 IPR007112 -
Lsi08g01302 227 SMART dpbb_1 65 153 IPR007112 -
Lsi08g01302 227 Pfam Lytic transglycolase 65 152 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01302 Lsi-Chr8:21385779 Lsi04g01024 Lsi-Chr4:11657775 9.61E-66 dispersed
Lsi08g01302 Lsi-Chr8:21385779 Lsi04g00406 Lsi-Chr4:3973635 2.19E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01302 - - csv:101216569 315.079