Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01303 ATGGAGCGGCATTTCCCTTTCCCCAAACCCTTGCAAAACCTTGCAAAAAAAAATCCAGCTTCCACTGTGATCTTGGTCGCCATGAGAAGGATTAACGGAGCTCATCTACTCAGCGGAATTGTAAGTGGTGATGCCACCACCGCCACCACTTACCGGCGGCTCCTCCGTCAATCAGCGGAGCTAAGAACATGCACTGGATCGAATATTCGGTGTTTCTCTCAAGTAGCGAATCCATTTGGTTCTTATTATCCTTCTTCTGTTCGAAAAGTTGCTGGAAATGGTCGGTGCGTCTCTATGGCCTCTTCATCGTTGGCTCAAGATTTGGTTAATGACCTACCGCCTCCGTCGTTCGTACCCAAGGATGTGGTTCTCTATCAGTACGAGGCTTGCCCGTTCTGCAATAAAGTTAAAGCATTCTTGGACTATTACAACGTCCCGTATAAAGTAGTGGAGGTGAATCCTATCTTCAAAAAGGAGATTAAGTGGTCTGAGTATAAGAAGGTGCCAATTCTGATGGTTGATGGTGCACAGATGGTGGATTCTACAGATATAATTGATAAGTTGTACCAAAGAATTCATCCTGAGAACTCTGCGTCGAACTCAGAAGAAGAAAGGAAATGGCTAGGGTGGGTGGATAATCACCTGGTGCATGTCTTATCGCCAAACATATACAGAAATTACAAAGAGGCTCTTGAGTCTTTCAACTACATAACCACACATGGGAATTTTAGTTTCGCTCAAAGGATAATAGCAAAGTATGGTGGGGCTACAGCCATGTATTTTGTTTCCAGGAAATTGAAAGAGAGACATAACATCACTGATGAACGCAAAGCCTTATATGGAGCTGCAGAAACATGGGTGGATGCACTGGAAGGCCGTCAGTTTCTTGGTGGAACGAATCCCAACTTAGCTGATCTTGCTGTCTTTGGCGTCTTGAGACCAATCCGACACCTTCAATCTGGAAAAGATATGGTAGAGCATACAAGAGTTGGTGAATGGTATACTAGAATGGAAAAGGCGGTGGGAGAGTCTGCAAGGATTGACTCCGGAAGATCAAGATCAGATTTGATCCTTTTCCATAAAGATTGGACTATTACGATGGACCTGTTGCTTAGGTTTGAGAACAGCCTAAATGTTTACAAAGATTGTAGCACCATCGTCGAAACAAAAATGGTGAAACCAAAAACCAGTTGCTCACCGCTTCAATCACTTGCTTTTTCCTTCTCCTTCCTCGCCGTCTTTCTTCTCAATGCGCATGCTCAGAGTCTCCCACCAGCAAAATTCGACGGTTTCGTATATGGAAATCACTCACTGGACTTAGATACGATCCTCATCGAGGCGTTTTTCGATCCGGTTTGTCCCGATAGCAGAGACTCTTGGCCACCTCTCAAAAAAGCCCTCGATCATTACGGCTCTCGCGTTCGTCTTGTCATTCACCTCCTCCCTCTACCTTATCATGACAATGCATATGCAGCATCTCGTGCTTTACATATTGTAGATTTGGTGAATCCCTCGGATACATTCAAATTGTTGGAAGCATTCTTCGGGCATCAGAAGCAGTTTTACAATGCCGAAACTCGTTATTTGTCAAGGGCTTCTGTTGTGGATAACATTGTGAAGTTTGGAGTTGAAGTACTGGGGAACTCCTACAAAAACACTCTAGTAACTGGCTTCAATGACAGGGACACCGATCTTTTGACACGTGTTTCTTTCAAGTTTAGCACCTCAAGAGGAGTCTATGGAACACCTTTTTTCTTTATAAATGGATTCCTAGCTCCTGATAAAGGATCTCCCATAAATTACACTGGATGGAGAAACTTGATCGACCCTTTGATCAAGAAAAATAAGAGATCAGGGTCTCAGCATCTATTGCTATGGATAACATCTAATCCTGGAAGAAATATAGCTCACTCACACTGGCTTAGTTATTTCATATGGGGCTTTCCTATTCACTCTGCTGTTCTTTCTTCTTCCCATCTCCACCCCATGTTGCAGACCTTCAATATCTCAAGTAATCAAAATCACGCTGACTTAGCTTTCTTTCAGAACCAAGCTGATCGAACCGATCGTCCAATTGGTTTATTGTCTCAAAAGCTTGGTAATTTTAGATGTGAATTAAAAGATGATTTTAAGGAAGAAGCCATGTGCACCGAAGTGACTTAA 2163 43.18 MERHFPFPKPLQNLAKKNPASTVILVAMRRINGAHLLSGIVSGDATTATTYRRLLRQSAELRTCTGSNIRCFSQVANPFGSYYPSSVRKVAGNGRCVSMASSSLAQDLVNDLPPPSFVPKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPIFKKEIKWSEYKKVPILMVDGAQMVDSTDIIDKLYQRIHPENSASNSEEERKWLGWVDNHLVHVLSPNIYRNYKEALESFNYITTHGNFSFAQRIIAKYGGATAMYFVSRKLKERHNITDERKALYGAAETWVDALEGRQFLGGTNPNLADLAVFGVLRPIRHLQSGKDMVEHTRVGEWYTRMEKAVGESARIDSGRSRSDLILFHKDWTITMDLLLRFENSLNVYKDCSTIVETKMVKPKTSCSPLQSLAFSFSFLAVFLLNAHAQSLPPAKFDGFVYGNHSLDLDTILIEAFFDPVCPDSRDSWPPLKKALDHYGSRVRLVIHLLPLPYHDNAYAASRALHIVDLVNPSDTFKLLEAFFGHQKQFYNAETRYLSRASVVDNIVKFGVEVLGNSYKNTLVTGFNDRDTDLLTRVSFKFSTSRGVYGTPFFFINGFLAPDKGSPINYTGWRNLIDPLIKKNKRSGSQHLLLWITSNPGRNIAHSHWLSYFIWGFPIHSAVLSSSHLHPMLQTFNISSNQNHADLAFFQNQADRTDRPIGLLSQKLGNFRCELKDDFKEEAMCTEVT 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21392617 21405863 - Lsi08G013030.1 Lsi08g01303 669229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01303 720 SUPERFAMILY Thioredoxin-like 416 589 IPR036249 -
Lsi08g01303 720 CDD GST_C_mPGES2 200 343 IPR034335 -
Lsi08g01303 720 Gene3D Glutaredoxin 118 193 - -
Lsi08g01303 720 Gene3D Glutaredoxin 439 608 - -
Lsi08g01303 720 SFLD Prostaglandin E synthase like 86 347 - -
Lsi08g01303 720 CDD DsbA_family 445 514 - -
Lsi08g01303 720 CDD GST_N_mPGES2 121 193 - -
Lsi08g01303 720 ProSiteProfiles Glutaredoxin domain profile. 110 207 - -
Lsi08g01303 720 Pfam Glutathione S-transferase, N-terminal domain 124 191 IPR004045 -
Lsi08g01303 720 SUPERFAMILY GST C-terminal domain-like 199 341 IPR036282 -
Lsi08g01303 720 ProSitePatterns Glutaredoxin active site. 124 140 IPR011767 -
Lsi08g01303 720 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 28 348 - -
Lsi08g01303 720 Pfam Thioredoxin 442 609 IPR012336 -
Lsi08g01303 720 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 28 348 - -
Lsi08g01303 720 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 120 196 IPR004045 -
Lsi08g01303 720 Gene3D - 197 347 - -
Lsi08g01303 720 SFLD Prostaglandin E synthase like.1 86 347 IPR034334 GO:0050220
Lsi08g01303 720 SUPERFAMILY Thioredoxin-like 121 215 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01303 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101215364 591.652
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01771 Lsi08g01303 CCT
Lsi04g01771 Lsi08g01303 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01278 Lsi-Chr6:23338007 Lsi08g01303 Lsi-Chr8:21392617 4.28E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g177 Blo01g01610 Blo12g00876 . Bda03g00296 . Bpe04g00256 Bma04g00257 Bma01g02384 . . Cma01g01987 Cma09g00089 Car01g01558 . . Cpe06g00052 . . . . . . . . Cla08g01406 Cam08g1886 Cec08g1463 Cco08g1596 Clacu08g1578 . Cre08g1361 . Cone7ag1910 . . Lsi04g01771 . Chy04g00397 . . . . . . . . . . Cmo01g02045 Cmo09g00087 . . . Car09g00077 . Cpe02g00058 . . . . . . . Cla05g01603 Cam05g1716 Cec05g1717 Cco05g1777 Clacu05g1705 Cmu05g1592 Cre05g1711 Lsi08g01303 . . .
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01303 Lsi_Chr08 FPKM 13.091937 16.22739 15.079881 17.043364 6.452482 4.533023 6.286687 13.472364 11.530287 13.731439