Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01305 ATGAGTGCGTCCAGGTTTATAAAGTGCGTAACGGTTGGTGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCCTATACGAGTAACACCTTCCCCACGGACTACGTGCCTACCGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAGCACGGTCAACCTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGCTATAGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAGTGGATTCCTGAATTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAGTTCTTTGTAGACCACCCTGGTGCAGTGCCCATTTCCACTGTTCAGGGAGAGGAGTTGAGAAAAGTTATCGGAGCCCCGGCATACATCGAGTGTAGTTCAAAAACCCAGCAGGCATGGCTATTTTTGTTTTGCACAGCCCCTATTTTTCGTATCTGTGCACGCTATATTCATGGAATTCGTTGGATGAAGAAAGTGCTTTTGCTTGTGCCGAAGGAACGACGACTTCATATGTACTCACCTTTTTCTCAGCATACCTTTAATCCATGTCATCCCAAGGAAGCGGCGAATGATGGACTGTATCGTATCGTATACGGCCCCAAGCTGACATTCCAAGATGCAAATAGAACAGTGATGATGTTTGTTTCTTATTTTGCAATCAGTTTGTTAGTGATGACCAACATTGCTAACCCCAATTTGTCTGTTTGA 807 43.62 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQAWLFLFCTAPIFRICARYIHGIRWMKKVLLLVPKERRLHMYSPFSQHTFNPCHPKEAANDGLYRIVYGPKLTFQDANRTVMMFVSYFAISLLVMTNIANPNLSV 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21409246 21412328 - Lsi08G013050.1 Lsi08g01305 669231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01305 268 CDD Rop_like 6 173 - -
Lsi08g01305 268 SMART ras_sub_4 4 182 - -
Lsi08g01305 268 PRINTS Transforming protein P21 ras signature 109 122 - -
Lsi08g01305 268 PRINTS Transforming protein P21 ras signature 7 28 - -
Lsi08g01305 268 PRINTS Transforming protein P21 ras signature 30 46 - -
Lsi08g01305 268 PRINTS Transforming protein P21 ras signature 47 69 - -
Lsi08g01305 268 ProSiteProfiles small GTPase Rho family profile. 1 179 - -
Lsi08g01305 268 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 170 - -
Lsi08g01305 268 TIGRFAM small_GTP: small GTP-binding protein domain 7 156 IPR005225 GO:0005525
Lsi08g01305 268 ProSiteProfiles small GTPase Ras family profile. 2 245 IPR001806 GO:0003924|GO:0005525
Lsi08g01305 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 170 IPR027417 -
Lsi08g01305 268 Pfam Ras family 8 165 IPR001806 GO:0003924|GO:0005525
Lsi08g01305 268 Gene3D - 1 174 IPR027417 -
Lsi08g01305 268 ProSiteProfiles small GTPase Rab1 family profile. 2 217 - -
Lsi08g01305 268 SMART rab_sub_5 7 186 - -
Lsi08g01305 268 PANTHER RHO FAMILY GTPASE 1 170 IPR003578 GO:0005525|GO:0007264
Lsi08g01305 268 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01305 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101216083 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00853 Lsi-Chr6:17968953 Lsi08g01305 Lsi-Chr8:21409246 2.10E-90 dispersed
Lsi07g01090 Lsi-Chr7:16297269 Lsi08g01305 Lsi-Chr8:21409246 1.33E-117 dispersed
Lsi08g01305 Lsi-Chr8:21409246 Lsi10g00494 Lsi-Chr10:7102355 2.23E-107 dispersed
Lsi08g01305 Lsi-Chr8:21409246 Lsi11g00250 Lsi-Chr11:2550722 1.00E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01305 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.110199 0.110992 0.0