Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01308 ATGGGGTTGCTTAGTAGTATACTGGGTTTCTTCGGGTTTGGCTTGGGAACCTCGATTGGGCTTGTGATTGGATATTATATGTTTATCTATTTTCAGCCATCAGATGTCAAGGATCCTGTTGTTCGCCCTTTGGTTGAGCAAGATACTGGCTCGTTGTTGCGGATGATGCCAGAAATACCTCTATGGGTGAAAAATCCTGATTACGATCGTGTTGACTGGCTCAACAAATTCCTTGAAATTATGTGGCCTTACTTGGACAAGGCCATTTGCAAGACAGTGAGGAACATAGCAAAGCCTATTATTGCAGAGCAGATTCCAAAATACAAAATCGACGCTGTTGAATTTGACACACTTACATTGGGCTGCTTACCGCCCACTTTTCAAGGAATGAAAGTTTATATGACTGATGATAAAGAGCTGATCATGGAGCCATGTATGAAGTGGGCGGGAAATCCAAATGTTACCGTTTCAGTGAAAGCATTTGGATTGAAAGCGACAGTTCAGGTGGTTGATTTGCAAGTGTTTGCTATTCCGCGAATAACCCTGAAGCCTTTGGTCCCAACATTTCCTTGCTTTGCCAAAATATTTGTGTCTCTCATGGAGAAGGAACTAATAAAAGACCAAGTTGCCAATATGTATCTATGGCCTAAGACCCTCGAAGTACCGATAATGGATCCTGCGAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTTTGAGAGCACAAAAGCTTAAAAAGAAGGATCTATTTGGGGCATCAGATCCATATTTAAAACTGAAGCTCACTGAAGACAAGCTTCCTTCTAAGAAAACAACTGTGAAACACACTAATTTGAACCCAATATGGAATGAGGAGTTTACTTTTGTTGTGAAAGATCCCGAGTCTCAAGCTTTGGAAATGATTCTTTACGATTGGGAGCAGGTTGGCAAGCACGATAAGATGGGAATGAACGTTGTTCCATTGAAAGAACTTACACCTGACGAGTCCAAGGAACTTACTCTCGAAGTGTTGAAAAATATGGATCCTAATGATGCACAAAATGAGAAGGCGAGAGGGCAGCTTGTTGTGGAATTGTTGTACAAACCTTTCAAGGACGATGAAGCTCCGAAAGAAGAAGATGATACAGAAGCAGTACAAAAGGCTCCTGATGGAACGCCTGATGGCGGAGGCTTACTCGTCGTCGTAATCCATCAAGCTGAAGATGTGGAAGGGAAGCATCATACAAACCCCTACGTCCGGTTACTTTTCAGAGGAGAGGAGAAAAGAACTAAGCATGTTAAGAAGAACCGGGATCCAAGATGGGACGAGGAGTTCCAGTTTATGCTCGAGGAGCCACCTGTCAACGATCGGATTCATGTGGAAGTACTCAGTGCCTCTTCAAGGATCGGCCTGCTTCACCCCAAGGAAACTTTGGGCTATGTGGATATAAACCTAGCTGATGTTGTCTCAAACAAGAGGATTAACGCGAAGTATCATCTCATCGACTCAAAGAACGGTCGGATCCAAATCGAGCTACAATGGAGAACTTCATCATAG 1545 43.24 MGLLSSILGFFGFGLGTSIGLVIGYYMFIYFQPSDVKDPVVRPLVEQDTGSLLRMMPEIPLWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTLGCLPPTFQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILHVKVLRAQKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPIWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPDESKELTLEVLKNMDPNDAQNEKARGQLVVELLYKPFKDDEAPKEEDDTEAVQKAPDGTPDGGGLLVVVIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFMLEEPPVNDRIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21437598 21442382 + Lsi08G013080.1 Lsi08g01308 669234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01308 514 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 266 IPR031468 GO:0008289
Lsi08g01308 514 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 206 IPR039010 -
Lsi08g01308 514 Pfam C2 domain 394 496 IPR000008 -
Lsi08g01308 514 Pfam C2 domain 235 335 IPR000008 -
Lsi08g01308 514 SMART C2_3c 394 493 IPR000008 -
Lsi08g01308 514 SMART C2_3c 236 336 IPR000008 -
Lsi08g01308 514 MobiDBLite consensus disorder prediction 369 389 - -
Lsi08g01308 514 ProSiteProfiles C2 domain profile. 377 494 IPR000008 -
Lsi08g01308 514 CDD C2 237 334 - -
Lsi08g01308 514 ProSiteProfiles C2 domain profile. 215 337 IPR000008 -
Lsi08g01308 514 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 203 - -
Lsi08g01308 514 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 202 512 - -
Lsi08g01308 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 367 IPR035892 -
Lsi08g01308 514 MobiDBLite consensus disorder prediction 369 383 - -
Lsi08g01308 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 393 511 IPR035892 -
Lsi08g01308 514 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 203 IPR045050 GO:0008289
Lsi08g01308 514 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 202 512 IPR045050 GO:0008289
Lsi08g01308 514 PRINTS C2 domain signature 301 309 IPR000008 -
Lsi08g01308 514 PRINTS C2 domain signature 279 292 IPR000008 -
Lsi08g01308 514 PRINTS C2 domain signature 252 264 IPR000008 -
Lsi08g01308 514 Gene3D C2 domain 394 513 IPR035892 -
Lsi08g01308 514 Gene3D C2 domain 230 388 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01308 - - - csv:101203849 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00076 Lsi-Chr4:930720 Lsi08g01308 Lsi-Chr8:21437598 0 dispersed
Lsi04g02114 Lsi-Chr4:28272578 Lsi08g01308 Lsi-Chr8:21437598 2.49E-65 dispersed
Lsi08g01308 Lsi-Chr8:21437598 Lsi10g00492 Lsi-Chr10:7058208 0 dispersed
Lsi11g01196 Lsi-Chr11:20441725 Lsi08g01308 Lsi-Chr8:21437598 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01308 Lsi_Chr08 FPKM 2.264957 1.451696 2.72444 2.569289 1.163323 2.45097 3.278021 3.337872 3.955443 4.944667