Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01310 ATGGAGAACGGCAGCTCAGTGCAGTGTCCAAACACGGTGACGGTTCGGAGAAACCCTCACCGGAGAGCAAGAGCCACGCCGGCTGCCAAAGCAGCCGAATCCAATCCTCCATCTGCCATTTCTTCATTTCCACTTCAAGAAATACTTGCGATGGAAGTCCCACAAAACCCTAAAGACAATTCATCATCATCGTCGTTATCCGTTCAAACTCCCCTCTCCGAAAACCTGAAAGTGTACCTTAGAGTTCGACCTTTGCAACTGAAGAATTTGAAGAAGTGCGTTAATCCTGGCGATCAAAATTCGAGGTCCGGACATGTATGGCCTCAGAACCCTCAGAAGAAGAAAGTAGCGAAGGAGAAGATTGTTAAGAAGAAGAGTAGCGAGACTTGTATTACGATTAATGATGATCACTCAGTAACAGTCTGTCCGCCTATGGCATTGCAAGAGACTAGGCGGAGTAAGTCTGAGGTTTACGAAGGATTTTCCCATGTGTTTTCTACGGAATCCTCTCAGGGTGAGGTGTATGAGAGGATGGTTAGTCCTTTAGTGGAGGATTTTCTGAAGGGCAAAAGTGGAATGCTGACTGCACTCGGTCCGAGCGGCTCGGGTAAGACCCATACCATTTTTGGTAGTCCAAGAGTTCCTGGTATGGTTCCACTGGCTCTTCAACATATTTTCCGGACAGAGTCGAATGATTCTCAATCCTCCAGATCATATTATTTATCAATCTTTGAAATATACTTAGAAAAAGGAAAAGGAGAAAAGATGTACGATCTTTCAGCAGATGGGGGTGAGTTAACTATGCAGCAGTTTACTATAAAGGGCCTTAAAGAGGTTTTAATATCTAATGCCGGAGAAGCTGAATCATTAGTGGCTTGTGCAATGGCTAAGCGTGCCACTGCAATTACGAATGCAAATAGCACATCAAGCCGGTCTCAGTGCATCATAAACGTGCGCAGAGTTGCTAACCAAGATGAAGTTGACAATCCATCGAACTGTGCCATCTTGACCATTGCTGATCTCGCTGGAGCTGAAAAAGAAAAAAGAACTGGGAATCAGGGGACAAGATTACTTGAAGCTAACTTCATCAATAATACATCAATGGTTTTTGGCTTGTGCCTAAGATCATTGTTTGAACACCAAAGGAATCCAAAGAAGCCACTGCAGAAGCATTTCCAGAACTCTTTGTTGACCAAGTACCTTCGAGATTACCTGGAAGGAAAGAAGCGAATGACCTTGATTTTAACTGTGAAAGCAGGAGAAGAAGATTATCTTGATACAACTTTCCTTCTCAGACAAGCTTCACCTTATATGAAAATCAAGTTCAACAATGTTGTGGAACCATCCAACACCAACAAGAGACAATTGCAAACGTTATGTACATTTGAGGAGCAGAAAAGAACAAAATATAGTGTTCCTGAAGCTTGTGTGAATGAAGGAAAGGGACATCACGAGGGAGGCCAGCTTTCTCATGAAGAGCCTTCAGGTCATACTGAGCGTTCAGCCACAAAGTCCAGCTGTACGGAATTGGCTGGGATTGAAAGAAACCATTTGATTATGCAAAATTTTGCTAAAACCATATGGCAAGTCTTGAAGCAGTATAGAGATAAACTAAAGAGTGCAGAGAATGAAAATCAATCTCTTCGAGAAGAAATTAGGAAGGAGAAGATGAGATATTTTGAGCTGGAAAAGCAATGGCAAAGCTCAAGATGTAGTACTTGCTCCAAGGAAGATTGTGCCGAAGCTGATTCATCCGTCAAAGTAGTTACAAGTTTTGAGTTAAAAAGTGATTTGGATGAGTACAGATTCAATGATGTTCACGAGAGTTGCTCAAAACTTGATGAAGTTAAAGAAGCACATATAAACAATGTAGACGAGACCACTCCTAGGAGTGAGTGCAACACGGCAAAAAAACTTACATATGTGGAAACAGAGGGTTGCCTGTCGACAAATCCTATAGGTAATACATGTTTTCTCATTTTTTTCGAATTAGCCTTTGGCACCCTGCAGTCCCATAACTTGGTGAAGCATGACAGCTGTTCATCGGTAGAGCTGGACAAACTCAGTGAGCAAGATGAGGAATCTACCTCAGTCGAATCACCTTCACAAGTAGCCTCGTTTATTCACTGCAATGCTACTGCATGTGAAACTCAACCCGTCCTTGATACTTCATTAAACCAATCAACTTCAGAGGAGTCTGATAGGGATTCAGGTGCTTTGAATGAAGACCAGGAACTCTTAGCGGAACTTTCGAATTCTCAACATGTACCTTCCACCGAGGATATTGAATCTTGTCAAGAACATGAACACCGCATTGATGTGCATTGCAGTGAACCAAGCACTGACATCTCATGCAAAATAGAGAAACCAAAAAGGAGACTTTTGCCCGCATCATCCACATTATTGAGGGATTTCAGCAATATGCATGTCGAGGATGATATTGAGGCGTCAAAGGTCTGTCCTGGTCTAGTAATCTCCGGTTCTAGTAAGTCCACGACTTGCTCTGAACTCCTTGATTATTATCTCCAGGGGTACAATGCTTGTGTAGTAGTGTTCTATTCTTTTGGTTTCTTGGCTTGGGCTTGGGGTTGTAGTTCTTTTGCTGCGAATGACTAA 2616 42.62 MENGSSVQCPNTVTVRRNPHRRARATPAAKAAESNPPSAISSFPLQEILAMEVPQNPKDNSSSSSLSVQTPLSENLKVYLRVRPLQLKNLKKCVNPGDQNSRSGHVWPQNPQKKKVAKEKIVKKKSSETCITINDDHSVTVCPPMALQETRRSKSEVYEGFSHVFSTESSQGEVYERMVSPLVEDFLKGKSGMLTALGPSGSGKTHTIFGSPRVPGMVPLALQHIFRTESNDSQSSRSYYLSIFEIYLEKGKGEKMYDLSADGGELTMQQFTIKGLKEVLISNAGEAESLVACAMAKRATAITNANSTSSRSQCIINVRRVANQDEVDNPSNCAILTIADLAGAEKEKRTGNQGTRLLEANFINNTSMVFGLCLRSLFEHQRNPKKPLQKHFQNSLLTKYLRDYLEGKKRMTLILTVKAGEEDYLDTTFLLRQASPYMKIKFNNVVEPSNTNKRQLQTLCTFEEQKRTKYSVPEACVNEGKGHHEGGQLSHEEPSGHTERSATKSSCTELAGIERNHLIMQNFAKTIWQVLKQYRDKLKSAENENQSLREEIRKEKMRYFELEKQWQSSRCSTCSKEDCAEADSSVKVVTSFELKSDLDEYRFNDVHESCSKLDEVKEAHINNVDETTPRSECNTAKKLTYVETEGCLSTNPIGNTCFLIFFELAFGTLQSHNLVKHDSCSSVELDKLSEQDEESTSVESPSQVASFIHCNATACETQPVLDTSLNQSTSEESDRDSGALNEDQELLAELSNSQHVPSTEDIESCQEHEHRIDVHCSEPSTDISCKIEKPKRRLLPASSTLLRDFSNMHVEDDIEASKVCPGLVISGSSKSTTCSELLDYYLQGYNACVVVFYSFGFLAWAWGCSSFAAND 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21454397 21463908 + Lsi08G013100.1 Lsi08g01310 669236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01310 871 MobiDBLite consensus disorder prediction 1 15 - -
Lsi08g01310 871 MobiDBLite consensus disorder prediction 478 499 - -
Lsi08g01310 871 Coils Coil 531 565 - -
Lsi08g01310 871 Pfam Kinesin motor domain 145 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 PANTHER KINESIN-RELATED 73 749 IPR027640 GO:0003777|GO:0007018
Lsi08g01310 871 Gene3D Kinesin motor domain 71 475 IPR036961 -
Lsi08g01310 871 MobiDBLite consensus disorder prediction 1 41 - -
Lsi08g01310 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 553 IPR027417 -
Lsi08g01310 871 MobiDBLite consensus disorder prediction 94 115 - -
Lsi08g01310 871 PANTHER KINESIN-LIKE PROTEIN KIF23 73 749 - -
Lsi08g01310 871 SMART kinesin_4 73 448 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 MobiDBLite consensus disorder prediction 477 504 - -
Lsi08g01310 871 MobiDBLite consensus disorder prediction 94 108 - -
Lsi08g01310 871 ProSiteProfiles Kinesin motor domain profile. 75 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 PRINTS Kinesin heavy chain signature 189 210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 PRINTS Kinesin heavy chain signature 390 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 PRINTS Kinesin heavy chain signature 335 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01310 871 PRINTS Kinesin heavy chain signature 303 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01310 K10401 KIF18_19; kinesin family member 18/19 - csv:101210482 1351.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01310 Lsi-Chr8:21454397 Lsi02g01384 Lsi-Chr2:18897382 1.13E-23 dispersed
Lsi08g01310 Lsi-Chr8:21454397 Lsi11g01135 Lsi-Chr11:19823003 4.32E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g01310 Lsi_Chr08 FPKM 15.117015 14.616871 1.405003 1.213327 1.117173 0.586576 0.800919 1.223697 1.428724 1.985463