Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01311 ATGGGATTTCTTCAAACAGATTTTCTTTCTCCTTCTTCTTTTTTGTTTCACTCTCTGCTTTTGATCATCTTCTTTAGAGGCGTTTCTGGAGCTGGATTTACGTTTGTAAATAGATGCGATTACACTGTTTGGCCGGGAATTCTTGGAAACACCCAATTGGAATCCACTGGATTCGAGCTCTCTCCGGGGGCGGCGCGTTCATTCCATGCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGGACCGGCTGTTCATTCGACCCGGCCACTGGTCAGGGAAGTTGCCAGACGGCTGACTGTGGGTCAAACCAAATGGAATGCAATGGCGCCGGAGCTACTCCGCCGGCAACTCTAGCCGAGTTTACTATCGGCGGCGGAGCCGGCGCGCAGGACTTTTACGATGTTAGTTTGGTCGACGGCTACAACATTCCGATGGTGGTGGATGCCACTGGTGGGAGCGGCGCGTGTCAGTCGACTGGGTGCGCGGCGGAGCTGAACCGGCGGTGCCCTGCGGAGCTACGGGCGGGCGAGGGTAAGGCCTGCAGGAGCGCGTGTGAGGCGTTTGGGAACCCGGAATACTGCTGCAGCGGCGCGTATAACTCACCCGCCGCCTGTAAGCCTTCGACGTACTCGGAAATGTTCAAATCGGCTTGCCCAAAATCGTATAGCTACGCCTTTGATGATGCAACAAGCACTTTTACTTGTAGTGGAGCAGATTATACCATTACATTCTGCCCTTCATCAACAAGCCAAAAATCAGAAAGAGACCCATCGAGCCGAGGCGATGGACCATCGGTGTCGTTCGACAGTTCATGGCTGCCGGATTTCATAACCGGAGAAGGATCATCCAAAACAATGCTGTTGTCTTCAACTTTGGATTCAACATTGTGGTTGCTTGACTTTGAATCTGAAAGATATGGTTGGTGGATGGTGGTGGAGGTTGGCGGTGGCGGTGGAGGTGGCGGTGGTTGTGATGGCGGTGGCGGGGAACCTGCTGTAAAGAACCAACTTTGCTGGACTATGAAGATTGGTAGTTTTTAA 1041 53.31 MGFLQTDFLSPSSFLFHSLLLIIFFRGVSGAGFTFVNRCDYTVWPGILGNTQLESTGFELSPGAARSFHAPPGWSGRFWGRTGCSFDPATGQGSCQTADCGSNQMECNGAGATPPATLAEFTIGGGAGAQDFYDVSLVDGYNIPMVVDATGGSGACQSTGCAAELNRRCPAELRAGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSTYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSTSQKSERDPSSRGDGPSVSFDSSWLPDFITGEGSSKTMLLSSTLDSTLWLLDFESERYGWWMVVEVGGGGGGGGGCDGGGGEPAVKNQLCWTMKIGSF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21466639 21469139 - Lsi08G013110.1 Lsi08g01311 669237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01311 346 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Lsi08g01311 346 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Lsi08g01311 346 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Lsi08g01311 346 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Lsi08g01311 346 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Lsi08g01311 346 CDD TLP-PA 33 245 - -
Lsi08g01311 346 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 15 270 - -
Lsi08g01311 346 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Lsi08g01311 346 SMART tha2 33 246 IPR001938 -
Lsi08g01311 346 Gene3D Thaumatin 31 246 IPR037176 -
Lsi08g01311 346 Pfam Thaumatin family 37 246 IPR001938 -
Lsi08g01311 346 PANTHER OS03G0233200 PROTEIN 15 270 IPR001938 -
Lsi08g01311 346 MobiDBLite consensus disorder prediction 247 266 - -
Lsi08g01311 346 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01754 Lsi08g01311 CCT
Lsi04g01754 Lsi08g01311 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01311 Lsi-Chr8:21466639 Lsi10g00480 Lsi-Chr10:6929595 1.45E-112 dispersed
Lsi08g01311 Lsi-Chr8:21466639 Lsi08g01312 Lsi-Chr8:21484746 7.35E-94 tandem
Lsi01g00594 Lsi-Chr1:4740368 Lsi08g01311 Lsi-Chr8:21466639 1.25E-127 wgd
Lsi04g01754 Lsi-Chr4:24798564 Lsi08g01311 Lsi-Chr8:21466639 1.63E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01311 - - csv:101204331 559.681