Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01312 ATGGCGGCGGCTGGAATTAAATTTCTATTGGCGCTCTTAAATCTGCTGCTGTTGGTACCAGGTGGGTTTTCGACGAGCTTTACTTTTGTGAACAAGTGTGGATTCACGGTTTGGCCGGGGGTTCTGTCGAACGGCGGCGTTCCGCCGCTTCCCACTACAGGCTTCTCGCTTCAGACTGGAGAGTCCAAGACGCTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTTTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGTGCTACTGGCGACTGTGGCTCTAACAAACTAGAGTGTGCTGGAAACGGAGCAACCCCACCGGCGACTCTGGCGGAGTTCACTCTTGACGGCTCCGGCGGGCTTGATTTCTTCGACGTCAGTCTGGTGGACGGTTACAATCTTCCGATGATTGTTGTGCCTCAGGGTGGTTCCGGCGATAATTGTACGAGCACCGGCTGCGTGGTGGATCTCAACGGCGCGTGTCCGTCAGAGCTGCGGGTGACGAGTGCCGACGGAAGAGAAGGCGTCGCATGTAAAAGCGCGTGTGACGCGTTCAACAAACCACAGTACTGTTGCACAGGCGCGTACCAAACACCGGACACTTGTCAGCCATCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGACAAGACGAGCACTTTCACATGCGCCAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAATACCAGCCAAAAGTCATCGGAGGCACAGAATTCACCGGCGACGGCGAACCCATCTTCCAGCGGCGACGGTGCAATGGTGTACGAAGGCGCATCTCTAATCCAAACCGACGCAGCGCCGCCACGCGTAGCCGGGATTTCAGCGGTGAGTACGGTGGCGATCTGGTGGTTGTGGCAGCAGCTGTTCTTCTACTTCTAA 945 56.51 MAAAGIKFLLALLNLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNKPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSSGDGAMVYEGASLIQTDAAPPRVAGISAVSTVAIWWLWQQLFFYF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21484746 21487049 - Lsi08G013120.1 Lsi08g01312 669238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01312 314 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lsi08g01312 314 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Lsi08g01312 314 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lsi08g01312 314 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lsi08g01312 314 Gene3D Thaumatin 25 247 IPR037176 -
Lsi08g01312 314 CDD TLP-PA 26 246 - -
Lsi08g01312 314 Pfam Thaumatin family 31 247 IPR001938 -
Lsi08g01312 314 SMART tha2 27 247 IPR001938 -
Lsi08g01312 314 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Lsi08g01312 314 PIRSF PR5 1 286 IPR001938 -
Lsi08g01312 314 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Lsi08g01312 314 PANTHER BNAA02G17480D PROTEIN 16 272 - -
Lsi08g01312 314 MobiDBLite consensus disorder prediction 251 271 - -
Lsi08g01312 314 PANTHER OS03G0233200 PROTEIN 16 272 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01754 Lsi-Chr4:24798564 Lsi08g01312 Lsi-Chr8:21484746 4.64E-153 dispersed
Lsi07g01100 Lsi-Chr7:16405759 Lsi08g01312 Lsi-Chr8:21484746 1.04E-106 dispersed
Lsi08g01312 Lsi-Chr8:21484746 Lsi10g00480 Lsi-Chr10:6929595 2.22E-100 dispersed
Lsi08g01311 Lsi-Chr8:21466639 Lsi08g01312 Lsi-Chr8:21484746 7.35E-94 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01312 - - csv:101204094 614.764